[R] read.alignment() crashes

Uwe Ligges ligges at statistik.tu-dortmund.de
Tue Mar 1 07:44:22 CET 2016

On 01.03.2016 01:34, Eric Hu wrote:
> Hi, I am trying to read a fasta file with >15K alignedd sequences. However it crashes showing a runtime error. I have tried both R.3.2.3 and R.3.2.1 under windows 7. A smaller fasta file works perfectly fine in either case.
> library(seqinr)
> myseqs <- read.alignment("aligned_seqs.fasta",format="fasta")

Just an error message or a crash?
In case of an error message: report it. In case of a crash: Report to 
the seqinr maintainer with a reproducible example.

Uwe Ligges

> Thanks,
> Eric
> 	[[alternative HTML version deleted]]
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