[R] Beginner needs help with R
jvadams at usgs.gov
Mon Feb 6 14:37:18 CET 2017
seq1 <- paste("DQ0", seq(60054, 60060), sep = "")
On Sun, Feb 5, 2017 at 7:50 PM, Nabila Arbi <nabilaelarbi1912 at gmail.com>
> Dear R-Help Team!
> I have some trouble with R. It's probably nothing big, but I can't find a
> My problem is the following:
> I am trying to download some sequences from ncbi using the ape package.
> seq1 <- paste("DQ", seq(060054, 060060), sep = "")
> sequences <- read.GenBank(seq1,
> seq.names = seq1,
> species.names = TRUE,
> gene.names = FALSE,
> as.character = TRUE)
> write.dna(sequences, "mysequences.fas", format = "fasta")
> My problem is, that R doesn't take the whole sequence number as "060054"
> but it puts it as DQ60054 (missing the zero in the beginning, which is
> Could please tell me, how I can get R to accepting the zero in the
> beginning of the accession number?
> Thank you very much in advance and all the best!
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> and provide commented, minimal, self-contained, reproducible code.
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