[R] Help installing netReg

[Spencer Brackett]

Mr. Gunter,

Yes I have reached out to the bioconductor list but was informed that my
inquiry concerning this package was not appropriate for the mailing list.
However, I have since tried re implementing the code which I sent and my R
Studio says that netReg has successfully been unpacked, so for now it
appears that my problem is solved :)

Best,

Spencer Brackett

On Sun, Apr 21, 2019 at 8:35 PM Bert Gunter <bgunter.4567 using gmail.com> wrote:

> netReg is not "the package that generates regression models in R." Tons of
> packages generate regression models in R, including lm(), which is in the
> stats package that is part of R's standard distro.
>
> So what exactly is it that you want to do that you think requires netReg?
> And if netReg is required, have you tried addressing your queries to the
> Bioconductor list, as it is one of their packages?
>
> Cheers,
> Bert
>
>
> "The trouble with having an open mind is that people keep coming along and
> sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
>
> On Sun, Apr 21, 2019 at 5:06 PM Spencer Brackett <
> spbrackett20 using saintjosephhs.com> wrote:
>
>> Good evening,
>>
>>  I am having problems with downloading the package used to generate
>> regression models on R. The following is the error message I received. I
>> tried installing BiocManager instead as suggested, but this too did not
>> work. Any ideas?
>>
>> The following is the full summary of what I’ve tried thus far...
>>
>> install.packages("ggplot2")
>> install.packages("ggplot2")
>> source("https://bioconductor.org/biocLite.R")
>> ?BiocUpgrade
>> source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
>> source("https://bioconductor.org/biocLite.R")
>> biocLite("BiocUpgrade")
>> source("https://bioconductor.org/bioLite.R")
>> biocLite("netReg")
>> help("Deprecated")
>> 'BiocManager::install'
>> biocLite("netReg")
>> help("oldName-deprecated")
>> ‘??oldName-deprecated’
>> .Deprecated(new, package=NULL, msg,
>> old = as.character(sys.call(sys.parent()))[1L])
>>
>> Best,
>>
>> Spencer
>>
>> On Sun, Apr 14, 2019 at 7:58 PM Spencer Brackett <
>> spbrackett20 using saintjosephhs.com> wrote:
>>
>> > My apologies... here is the full code in summary
>> >
>> > install.packages("ggplot2")
>> > install.packages("ggplot2")
>> > source("https://bioconductor.org/biocLite.R")
>> > ?BiocUpgrade
>> > source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
>> > source("https://bioconductor.org/biocLite.R")
>> > biocLite("BiocUpgrade")
>> > source("https://bioconductor.org/bioLite.R")
>> > biocLite("netReg")
>> > help("Deprecated")
>> > 'BiocManager::install'
>> > biocLite("netReg")
>> > help("oldName-deprecated")
>> > ‘??oldName-deprecated’
>> > .Deprecated(new, package=NULL, msg,
>> > old = as.character(sys.call(sys.parent()))[1L])
>> >
>> > Best,
>> >
>> > Spencer
>> >
>> >
>> >
>> > On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <dwinsemius using comcast.net
>> >
>> > wrote:
>> >
>> >>
>> >> On 4/14/19 3:20 PM, Spencer Brackett wrote:
>> >> > Good evening,
>> >> >
>> >> >   I am having problems with downloading the package used to generate
>> >> > regression models on R. The following is the error message I
>> received. I
>> >> > tried installing BiocManager instead as suggested, but this too did
>> not
>> >> > work. Any ideas?
>> >> >
>> >> > The downloaded binary packages are in
>> >> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
>> >> > installation path not writeable, unable to update packages: class,
>> >> cluster,
>> >> > codetools, foreign,
>> >> >    lattice, MASS, Matrix, mgcv, nlme, rpart, survival
>> >> > Warning message:
>> >> > 'biocLite' is deprecated.
>> >> > Use 'BiocManager::install' instead.
>> >> > See help("Deprecated")
>> >>
>> >>
>> >> Since you did not include the code that provoked this message we can
>> >> only guess that you did in fact use `bioLite`. We also cannot tell what
>> >> you mean by "problems with downloading the package used to generate
>> >> regression models on R". The typical first step is to use the glm or lm
>> >> function for this task and those are both in the stats package which is
>> >> installed with the base version of R and is loaded by default when R is
>> >> started up.
>> >>
>> >> "
>> >>
>> >> Have you tried following the suggestion at the end of the message?
>> >>
>> >>
>> >> And do read the Posting Guide and include "commented, minimal,
>> >> self-contained, reproducible code."
>> >>
>> >>
>> >> --
>> >>
>> >> David.
>> >>
>> >> >
>> >> > Best,
>> >> >
>> >> > Spencer
>> >> >
>> >> >       [[alternative HTML version deleted]]
>> >> >
>> >> > ______________________________________________
>> >> > R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> >> > https://stat.ethz.ch/mailman/listinfo/r-help
>> >> > PLEASE do read the posting guide
>> >> http://www.R-project.org/posting-guide.html
>> >> > and provide commented, minimal, self-contained, reproducible code.
>> >>
>> >
>>
>>         [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>

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