[R] Help installing netReg

[Spencer Brackett]

R users,

  I am trying to download R Studio onto my Chrombook for convenience, but
exited out of the Linux terminal that had opened upon my turning on of
Linux(Beta) through my settings. Because of this I am unable to prompt the
same type of Linex terminal and can only enable a new one via ctrl alt t .
Running the same line of commands (as shown below) that I was following
before encountering my error w/ the first terminal is not working. Note,
the hostname for the new terminal that I have prompted is crosh> if that
effects anything.

Commands I was instructed to make after enabling Linux on my Chrome...

lsb_release
sudo apt search r-base | grep ^r-base (to download R)

-y gnupg2
—keyserver keys.gnupg.net —recv-key ‘ ‘
***where my terminal experienced some sort of error causing me to abandon
it***

Any pointers for how I may proceed or alternative tutorials that I may
follow?

Best,

Spencer Brackett


On Sun, Apr 21, 2019 at 9:35 PM Spencer Brackett <
spbrackett20 using saintjosephhs.com> wrote:

> Mr. Gunter,
>
> Yes I have reached out to the bioconductor list but was informed that my
> inquiry concerning this package was not appropriate for the mailing list.
> However, I have since tried re implementing the code which I sent and my R
> Studio says that netReg has successfully been unpacked, so for now it
> appears that my problem is solved :)
>
> Best,
>
> Spencer Brackett
>
> On Sun, Apr 21, 2019 at 8:35 PM Bert Gunter <bgunter.4567 using gmail.com>
> wrote:
>
>> netReg is not "the package that generates regression models in R." Tons
>> of packages generate regression models in R, including lm(), which is in
>> the stats package that is part of R's standard distro.
>>
>> So what exactly is it that you want to do that you think requires netReg?
>> And if netReg is required, have you tried addressing your queries to the
>> Bioconductor list, as it is one of their packages?
>>
>> Cheers,
>> Bert
>>
>>
>> "The trouble with having an open mind is that people keep coming along
>> and sticking things into it."
>> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>>
>>
>> On Sun, Apr 21, 2019 at 5:06 PM Spencer Brackett <
>> spbrackett20 using saintjosephhs.com> wrote:
>>
>>> Good evening,
>>>
>>>  I am having problems with downloading the package used to generate
>>> regression models on R. The following is the error message I received. I
>>> tried installing BiocManager instead as suggested, but this too did not
>>> work. Any ideas?
>>>
>>> The following is the full summary of what I’ve tried thus far...
>>>
>>> install.packages("ggplot2")
>>> install.packages("ggplot2")
>>> source("https://bioconductor.org/biocLite.R")
>>> ?BiocUpgrade
>>> source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
>>> source("https://bioconductor.org/biocLite.R")
>>> biocLite("BiocUpgrade")
>>> source("https://bioconductor.org/bioLite.R")
>>> biocLite("netReg")
>>> help("Deprecated")
>>> 'BiocManager::install'
>>> biocLite("netReg")
>>> help("oldName-deprecated")
>>> ‘??oldName-deprecated’
>>> .Deprecated(new, package=NULL, msg,
>>> old = as.character(sys.call(sys.parent()))[1L])
>>>
>>> Best,
>>>
>>> Spencer
>>>
>>> On Sun, Apr 14, 2019 at 7:58 PM Spencer Brackett <
>>> spbrackett20 using saintjosephhs.com> wrote:
>>>
>>> > My apologies... here is the full code in summary
>>> >
>>> > install.packages("ggplot2")
>>> > install.packages("ggplot2")
>>> > source("https://bioconductor.org/biocLite.R")
>>> > ?BiocUpgrade
>>> > source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
>>> > source("https://bioconductor.org/biocLite.R")
>>> > biocLite("BiocUpgrade")
>>> > source("https://bioconductor.org/bioLite.R")
>>> > biocLite("netReg")
>>> > help("Deprecated")
>>> > 'BiocManager::install'
>>> > biocLite("netReg")
>>> > help("oldName-deprecated")
>>> > ‘??oldName-deprecated’
>>> > .Deprecated(new, package=NULL, msg,
>>> > old = as.character(sys.call(sys.parent()))[1L])
>>> >
>>> > Best,
>>> >
>>> > Spencer
>>> >
>>> >
>>> >
>>> > On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <
>>> dwinsemius using comcast.net>
>>> > wrote:
>>> >
>>> >>
>>> >> On 4/14/19 3:20 PM, Spencer Brackett wrote:
>>> >> > Good evening,
>>> >> >
>>> >> >   I am having problems with downloading the package used to generate
>>> >> > regression models on R. The following is the error message I
>>> received. I
>>> >> > tried installing BiocManager instead as suggested, but this too did
>>> not
>>> >> > work. Any ideas?
>>> >> >
>>> >> > The downloaded binary packages are in
>>> >> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
>>> >> > installation path not writeable, unable to update packages: class,
>>> >> cluster,
>>> >> > codetools, foreign,
>>> >> >    lattice, MASS, Matrix, mgcv, nlme, rpart, survival
>>> >> > Warning message:
>>> >> > 'biocLite' is deprecated.
>>> >> > Use 'BiocManager::install' instead.
>>> >> > See help("Deprecated")
>>> >>
>>> >>
>>> >> Since you did not include the code that provoked this message we can
>>> >> only guess that you did in fact use `bioLite`. We also cannot tell
>>> what
>>> >> you mean by "problems with downloading the package used to generate
>>> >> regression models on R". The typical first step is to use the glm or
>>> lm
>>> >> function for this task and those are both in the stats package which
>>> is
>>> >> installed with the base version of R and is loaded by default when R
>>> is
>>> >> started up.
>>> >>
>>> >> "
>>> >>
>>> >> Have you tried following the suggestion at the end of the message?
>>> >>
>>> >>
>>> >> And do read the Posting Guide and include "commented, minimal,
>>> >> self-contained, reproducible code."
>>> >>
>>> >>
>>> >> --
>>> >>
>>> >> David.
>>> >>
>>> >> >
>>> >> > Best,
>>> >> >
>>> >> > Spencer
>>> >> >
>>> >> >       [[alternative HTML version deleted]]
>>> >> >
>>> >> > ______________________________________________
>>> >> > R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> >> > https://stat.ethz.ch/mailman/listinfo/r-help
>>> >> > PLEASE do read the posting guide
>>> >> http://www.R-project.org/posting-guide.html
>>> >> > and provide commented, minimal, self-contained, reproducible code.
>>> >>
>>> >
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>

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