[R] Call `rlang::last_error()` to see a backtrace

Ana Marija @okov|c@@n@m@r|j@ @end|ng |rom gm@||@com
Thu Jul 11 01:01:41 CEST 2019


Hi Patrick,

do you refer to this?
https://github.com/kenhanscombe/ukbtools/issues/20

I did it:

> devtools::install_github("kenhanscombe/ukbtools", build_vignettes = TRUE,
dependencies = TRUE,force=TRUE)

but still the same error:
> library(ukbtools)
> my_ukb_data <- ukb_df("ukb31212")
> ukb_icd_diagnosis(my_ukb_data, id = "1000017", icd.version = 10)
Error: Column 1 must be named.
Use .name_repair to specify repair.
Call `rlang::last_error()` to see a backtrace

On Wed, Jul 10, 2019 at 5:49 PM Patrick (Malone Quantitative) <
malone using malonequantitative.com> wrote:

> On Wed, Jul 10, 2019 at 4:52 PM David Winsemius <dwinsemius using comcast.net>
> wrote:
> >
> > Did you read the bug report from three weeks ago and the suggested fix
> documented on the webpage you cited?
> >
> > —
> > David
> >
> >
> > Sent from my iPhone
> >
> > > On Jul 10, 2019, at 1:09 PM, Patrick (Malone Quantitative) <
> malone using malonequantitative.com> wrote:
> > >
> > > First response: The ID column in your data is labeled "eid" but your
> > > function call refers to "id".
> > >
> > >
> > >> On Wed, Jul 10, 2019 at 1:38 PM Ana Marija <
> sokovic.anamarija using gmail.com> wrote:
> > >>
> > >> Hello,
> > >>
> > >> I am trying to use this program:
> > >> https://github.com/kenhanscombe/ukbtools
> > >>
> > >>> my_ukb_data[1:3,1:3]
> > >>      eid sex_f31_0_0 year_of_birth_f34_0_0
> > >> 1 1000017      Female                  1938
> > >> 2 1000025      Female                  1951
> > >> 3 1000038        Male                  1961
> > >>
> > >>> ukb_icd_diagnosis(my_ukb_data, id = "1000017", icd.version = 10)
> > >> Error: Column 1 must be named.
> > >> Use .name_repair to specify repair.
> > >> Call `rlang::last_error()` to see a backtrace
> > >>
> > >> Function is described here:
> > >>
> https://kenhanscombe.github.io/ukbtools/reference/ukb_icd_diagnosis.html
> > >>
> > >> I run it on:
> > >>
> > >> $platform
> > >> [1] "x86_64-pc-linux-gnu"
> > >> $arch
> > >> [1] "x86_64"
> > >> $version.string
> > >> [1] "R version 3.5.0 (2018-04-23)"
> > >>
> > >> Would anyone know why this is happening?
> > >>
> > >> Thanks!
> > >>
> > >>        [[alternative HTML version deleted]]
> > >>
> > >> ______________________________________________
> > >> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > >> https://stat.ethz.ch/mailman/listinfo/r-help
> > >> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > >> and provide commented, minimal, self-contained, reproducible code.
> > >
> > > ______________________________________________
> > > R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > > and provide commented, minimal, self-contained, reproducible code.
> >
>
> ______________________________________________
> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

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