[R] Call `rlang::last_error()` to see a backtrace

Patrick (Malone Quantitative) m@|one @end|ng |rom m@|onequ@nt|t@t|ve@com
Thu Jul 11 01:02:34 CEST 2019


It was David's answer, not mine. Please ask him (and R-Help).

On Wed, Jul 10, 2019 at 7:01 PM Ana Marija <sokovic.anamarija using gmail.com> wrote:
>
> do I have to update maybe any of the libraries show in attach?
>
> On Wed, Jul 10, 2019 at 6:01 PM Ana Marija <sokovic.anamarija using gmail.com> wrote:
>>
>> Hi Patrick,
>>
>> do you refer to this?
>> https://github.com/kenhanscombe/ukbtools/issues/20
>>
>> I did it:
>>
>> > devtools::install_github("kenhanscombe/ukbtools", build_vignettes = TRUE, dependencies = TRUE,force=TRUE)
>>
>> but still the same error:
>> > library(ukbtools)
>> > my_ukb_data <- ukb_df("ukb31212")
>> > ukb_icd_diagnosis(my_ukb_data, id = "1000017", icd.version = 10)
>> Error: Column 1 must be named.
>> Use .name_repair to specify repair.
>> Call `rlang::last_error()` to see a backtrace
>>
>> On Wed, Jul 10, 2019 at 5:49 PM Patrick (Malone Quantitative) <malone using malonequantitative.com> wrote:
>>>
>>> On Wed, Jul 10, 2019 at 4:52 PM David Winsemius <dwinsemius using comcast.net> wrote:
>>> >
>>> > Did you read the bug report from three weeks ago and the suggested fix documented on the webpage you cited?
>>> >
>>> > —
>>> > David
>>> >
>>> >
>>> > Sent from my iPhone
>>> >
>>> > > On Jul 10, 2019, at 1:09 PM, Patrick (Malone Quantitative) <malone using malonequantitative.com> wrote:
>>> > >
>>> > > First response: The ID column in your data is labeled "eid" but your
>>> > > function call refers to "id".
>>> > >
>>> > >
>>> > >> On Wed, Jul 10, 2019 at 1:38 PM Ana Marija <sokovic.anamarija using gmail.com> wrote:
>>> > >>
>>> > >> Hello,
>>> > >>
>>> > >> I am trying to use this program:
>>> > >> https://github.com/kenhanscombe/ukbtools
>>> > >>
>>> > >>> my_ukb_data[1:3,1:3]
>>> > >>      eid sex_f31_0_0 year_of_birth_f34_0_0
>>> > >> 1 1000017      Female                  1938
>>> > >> 2 1000025      Female                  1951
>>> > >> 3 1000038        Male                  1961
>>> > >>
>>> > >>> ukb_icd_diagnosis(my_ukb_data, id = "1000017", icd.version = 10)
>>> > >> Error: Column 1 must be named.
>>> > >> Use .name_repair to specify repair.
>>> > >> Call `rlang::last_error()` to see a backtrace
>>> > >>
>>> > >> Function is described here:
>>> > >> https://kenhanscombe.github.io/ukbtools/reference/ukb_icd_diagnosis.html
>>> > >>
>>> > >> I run it on:
>>> > >>
>>> > >> $platform
>>> > >> [1] "x86_64-pc-linux-gnu"
>>> > >> $arch
>>> > >> [1] "x86_64"
>>> > >> $version.string
>>> > >> [1] "R version 3.5.0 (2018-04-23)"
>>> > >>
>>> > >> Would anyone know why this is happening?
>>> > >>
>>> > >> Thanks!
>>> > >>
>>> > >>        [[alternative HTML version deleted]]
>>> > >>
>>> > >> ______________________________________________
>>> > >> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> > >> https://stat.ethz.ch/mailman/listinfo/r-help
>>> > >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> > >> and provide commented, minimal, self-contained, reproducible code.
>>> > >
>>> > > ______________________________________________
>>> > > R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> > > https://stat.ethz.ch/mailman/listinfo/r-help
>>> > > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> > > and provide commented, minimal, self-contained, reproducible code.
>>> >
>>>
>>> ______________________________________________
>>> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.



More information about the R-help mailing list