[R] Help with R-Markdown please

[Poling, William]

Hi Rasmus, thank you I will see if this is something I can do without IT admin access.

In the mean time I have reloaded rmarkdown. To local

package ‘rmarkdown’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
	C:\Users\A436798\AppData\Local\Temp\RtmpYjSy7G\downloaded_packages

library(rmarkdown)

But R is still looking for it in : " Could not fetch http://?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html"


More recently I have installed other pkgs for the first time use and they have gone to local like above for rmarkdown and I have used functions from them so they are being searched for correctly I guess?

Very confusing.

Thank you for your response Sir!

WHP

"C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS Member-Geo-Location-Test-V1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output Member-Geo-Location-Test-V1.html --email-obfuscation none --self-contained --standalone --section-divs --template "\\winp-oaf-113\FldrRedir_1$\A436798\Data\R\R-4.0.0patched\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:bootstrap" --include-in-header "C:\Users\A436798\AppData\Local\Temp\RtmpglP9GJ\rmarkdown-str314c55414a00.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/lua/latex-div.lua" 
output file: Member-Geo-Location-Test-V1.knit.md

Could not fetch http://?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html
HttpExceptionRequest Request {
  host                 = ""
  port                 = 80
  secure               = False
  requestHeaders       = []
  path                 = "/"
  queryString          = "?/UNC/winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library/rmarkdown/rmd/h/default.html"
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (InvalidDestinationHost "")
Error: pandoc document conversion failed with error 61
Execution halted


WHP


Proprietary

-----Original Message-----
From: Rasmus Liland <jral using posteo.no> 
Sent: Wednesday, May 13, 2020 2:10 PM
To: Poling, William <PolingW using aetna.com>
Cc: r-help using r-project.org
Subject: [EXTERNAL] Re: [R] Help with R-Markdown please

**** External Email - Use Caution ****

On 2020-05-13 18:46 +0000, Poling, William via R-help wrote:
> Hello all.
> 
> I am still struggling with this issue.
> 
> It appears that new installations are going to local drive.
> 
> # #Test 05/13/2020
> # install.packages("abjutils")
> # package ‘abjutils’ successfully unpacked and MD5 sums checked # # 
> The downloaded binary packages are in # 
> C:\Users\A436798\AppData\Local\Temp\RtmpCuXNJn\downloaded_packages
> 
> However, when I run .libPaths() it
> indicates our UNC path
> 
> [1] "\\\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library"
> 
> Is there a way for me to change this myself in my instance of R?

Dear William,

Perhaps you could try to set the variable R_LIBS_USER to some local folder.  I do not know how to do this on Windows, but there seems to be some guys in this rstudio discussion thread that came to some sort of a
conclusion: 
https://urldefense.proofpoint.com/v2/url?u=https-3A__community.rstudio.com_t_help-2Dregarding-2Dpackage-2Dinstallation-2Drenviron-2Drprofile-2Dr-2Dlibs-2Dr-2Dlibs-2Dsite-2Dand-2Dr-2Dlibs-2Duser-2Doh-2Dmy_13888_8&d=DwIDaQ&c=wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmvOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTCtKvneM2ExlYvnUWbsByY&m=q_5fam9luSaeNgs-KOUZS-w-YAVaPzQdZgIlejBCDFA&s=NWDnltFH8cjC-pj6K08lWXC1FjfFcyY1mueSZnor9Ng&e=  

Since long ago, I have had this line in my ~/.zshrc.local  :)

[ -e /usr/bin/Rscript ] && R_LIBS_USER=`Rscript -e 'cat(Sys.getenv("R_LIBS_USER"))'`

Best,
Rasmus

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