[R] Error: C stack usage 15924320 is too close to the limit

[Bert Gunter]

Please see the posting guide linked below. Questions about nonstandard
packages are generally  off topic here. You should probably do as the pg
recommends and contact the maintainer, who you can find by the maintainer()
function.

Bert

On Sat, May 29, 2021, 10:16 AM Gossaye Hailu <gossaye15 using gmail.com> wrote:

> I am doing phylogenetic analysis of ecological community data set using
> Picante package to find out PD, MPD, MNTD
> I have run the following arguments
> library(picante)
> >tree4.phylotree<-read.tree("phylojune2016.edit.phy")
> >tree4.phy<-read.csv("june2016.matrix.csv",sep=",",header = TRUE,row.names
> = 1)
> >tree4.out<-pd(tree4.phy,tree4.phylotree,include.root = FALSE)
> >tree4.out[,3]<-mpd(tree4.phy,cophenetic(tree4.phylotree))
> >tree4.out[,4]<-mntd(tree4.phy,cophenetic(tree4.phylotree))
> >names(tree4.out)[3:4]<-c("MPD","MNTD")
>
> When I randomize the matrix 999 times the following Error term appears
> >tree4.mpd<-ses.mpd(tree4.phy,cophenetic(tree4.phylotree),runs = 999)
>
> Error: C stack usage  15923904 is too close to the limit
>
> How can I solve this error please? I will highly appreciate your help!
>
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>
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