[BioC] Time course experiment

Yu Chuan Tai yuchuan at stat.Berkeley.EDU
Thu Dec 8 16:14:18 CET 2005


Yes. The current Timecourse package is only for longitudinal time course
data. In the future, the functionality for cross-sectional time course
data will also be built in.

Best,
Yu Chuan

On Wed, 7 Dec 2005 kfbargad at ehu.es wrote:

> Dear Sohail,
>
> Limma can perform time course analysis. Just have a look at the
> manual, where there is an example of a time course experiment. Also
> there is another package called Timecourse, but I think it focuses on
> analysis of dependent data.
>
> Hope this helps,
>
> David
>
> > Dear List,
> >
> > I have a time course experiment with three time points and 5
> replicates for each time point.  I want to  get an expression profile
> from this data, and get the differential expression for different time
> points.  I am new at this so please disregard the trivial nature of
> this question.  How can I analyze this type of data?
> >
> >
> >
> >
> > Sohail Khan
> > Scientific Programmer
> > COLD SPRING HARBOR LABORATORY
> > Genome Research Center
> > 500 Sunnyside Boulevard
> > Woodbury, NY 11797
> > (516)422-4076
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> >
>
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