[BioC] PLIER Error

[Crispin Miller]

Hi Anthony,

It's different from justRMA()

You need to give it an AffyBatch object to normalise:

  raw <- ReadAffy()
  eset <- justPlier(raw)

(I'll update the function so it works the same way as justRMA() with no
parameters, when I get a moment :-) ).

Cheers,
Crispin


-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Anthony
Bosco
Sent: 17 February 2005 05:46
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] PLIER Error

Hi,

I have got the following error using plier on R version 2.0.


eset<-justPlier()

Quantile normalizing...Error: recursive default argument reference Error
in indexProbes(abatch, "both") : Unable to find the argument "object" in
selecting a method for function "indexProbes"
>
--
______________________________________________

Anthony Bosco - PhD Student

Institute for Child Health Research
(Company Limited by Guarantee ACN 009 278 755) Subiaco, Western
Australia, 6008

Ph 61 8 9489  , Fax 61 8 9489 7700
email anthonyb at ichr.uwa.edu.au

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