[BioC] Getting LimmaGUI to run

[stefano iacus]

On 11/lug/05, at 22:26, chris umbricht wrote:

> Rob,
>
> thanks for your feedback, and I do understand your directions, i.e. I
> think I will be able to navigate this X11 dependency with your
> suggestions.
>
> I was trying to give Stefano some feedback, since he is heavily
> involved in developing the OS X version of R.App, and I'm trying to
> distinguish between my misunderstanding some elements of the GUI vs
> having a corrupted installation. It seems to me that having to delete
> the .RData file from the terminal should not be necessary as routine
> measure...
>
> I'm hoping he will chime in, since he asked me for more details
> earlier, but I'm not sure what he needs.

it R quits "unexpectedly" the finder will tell you, just press the  
button concerning the crash report (I think is something like "send  
report")
stefano


>
>
> On Jul 11, 2005, at 4:18 PM, Rob J Goedman wrote:
>
>
>> Chris,
>>
>> Remove .RData (as in previous emails).
>> Start R and close R. When it asks if you want to save
>> the session, choose Save to create a new .RData file.
>>
>> I nearly always select Don't Save, which will not create a new
>> .Rdata file.
>>
>> If you don't load tcltk, jpeg and/or png, e.g. used in marray, (maybe
>> there are a few other packages that will require X11), you don't need
>> X11 and it will not end up as a dependency in .RData.
>>
>> Or you can automatically start X11 when you login (Drag it to Login
>> items of your Account is System Preferences).
>>
>> Rob
>>
>>
>> On Jul 11, 2005, at 12:44 PM, chris umbricht wrote:
>>
>>
>>> Right, so how do I change the .RData back to not containing tcltk
>>> calls?
>>>
>>> I tried the (to me) obvious steps of unchecking anything tcltk- 
>>> related
>>> in the manager, and trying to clear the workspace etc. without
>>> apparent
>>> effect...
>>>
>>> c.
>>>
>>>
>>> On Jul 11, 2005, at 12:39 PM, stefano iacus wrote:
>>>
>>>
>>>
>>>> Hi Chris,
>>>> no it has always been the case. And the problem is that probably  
>>>> your
>>>> .RData contains calls to tcltk.
>>>> Any call to tcltk, X11 etc requires a X11 server to be running.
>>>> btw, I need more detailed bug report that this.
>>>> stefano
>>>>
>>>>
>>>
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>>>
>>>
>>
>>
>
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