[BioC] retrieve genes names after KEGG hypergeometric test

Clémentine Dressaire clementinedressaire at itqb.unl.pt
Fri Oct 29 13:27:44 CEST 2010

Dear BioC users,

I performed different hypergometric tests on my data regarding GO terms

and KEGG pathways. With GO resukt I can use the probeSetSummary function to

retrieve the gene list associated to each significant category.

However this function does not work if I apply the HG test using

KEGGHyperGParams because the results are not of GOHyperGResult class... Is

there any equivalent KEGG function to get those genes list? 

WIth advanced thanks for your help.



Clémentine Dressaire

Post-doctoral research fellow

Control of gene expression lab

ITQB - Instituto de Tecnologia Química e Biológica

Apartado 127, Av. da República

2780-157 Oeiras


+351 214469562

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