[BioC] Using DESeq or EdgeR for Exon Differential Expression Analysis

[adeonari at mrc-lmb.cam.ac.uk]

Hi Vasu,

RNA-seq.

Cheers,

Andrew

> You are asking about Affy Exon Expression array or after RNA-seq?
>  
> Vasu
>
> --- On Thu, 3/31/11, adeonari at mrc-lmb.cam.ac.uk
> <adeonari at mrc-lmb.cam.ac.uk> wrote:
>
>
> From: adeonari at mrc-lmb.cam.ac.uk <adeonari at mrc-lmb.cam.ac.uk>
> Subject: [BioC] Using DESeq or EdgeR for Exon Differential Expression
> Analysis
> To: "'bioconductor at r-project.org'" <bioconductor at r-project.org>
> Date: Thursday, March 31, 2011, 1:18 PM
>
>
> Hello Bioconductor community,
>
> We were wondering if it would be possible to perform differential
> expression analysis of exon expression using DESeq or EdgeR. Would the
> statistical assumptions be the same, and has anyone attempted this type of
> analysis? Any feedback or insights would be really appreciated!
>
> Cheers,
>
> Andrew
>
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