[BioC] Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer

Marc Carlson mcarlson at fhcrc.org
Tue Sep 18 18:16:06 CEST 2012

Hi Joachim,

The version of the GenomicFeatures package in the development branch of 
Bioconductor has had this functionality since the spring.  The new 
release scheduled for October 2nd will also have it.


On 09/18/2012 08:36 AM, Bargsten, Joachim wrote:
> Hi all,
> I tried to figure out how to get GFF3 annotation data into a
> TranscriptDb object. So far, I could only find the posts in this thread
> and the proposed solution did not work very well for me. In the end, I
> implemented a "makeTranscriptDbFromGFF3" function myself. For those who
> are interested, you can find my version on:
> https://gist.github.com/3743732
> 	Joachim
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

More information about the Bioconductor mailing list