[R] Installing Cardinal Workflows

Jeff Newmiller jdnewmil at dcn.davis.ca.us
Wed Apr 19 08:22:11 CEST 2017

See http://bfy.tw/BIkn

For next time I recommend reading the Posting Guide mentioned in the footer of this and every post on this list. 
Sent from my phone. Please excuse my brevity.

On April 18, 2017 8:18:01 PM PDT, Shadrack Mutuku <shadymutu at gmail.com> wrote:
>I have successfully installed the cardinal package but having issues 
>installing cardinal workflows.  I am getting the following error
>message on 
>my console:
>> source("http://bioconductor.org/biocLite.R")
>Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
>> biocLite("CardinalWorkflows")
>BioC_mirror: https://bioconductor.org
>Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.3 (2017-03-06).
>Installing package(s) ‘CardinalWorkflows’
>installing the source package ‘CardinalWorkflows’
>trying URL 
>Content type 'application/x-gzip' length 150031609 bytes (143.1 MB)
>downloaded 143.1 MB
>'C:\Program' is not recognized as an internal or external command,
>operable program or batch file.
>The downloaded source packages are in
>installation path not writeable, unable to update packages: cluster, 
>  survival
>Warning messages:
>1: running command '"C:/Program Files/R/R-3.3.3/bin/x64/R" CMD INSTALL
>had status 1 
>2: In install.packages(pkgs = doing, lib = lib, ...) :
>  installation of package ‘CardinalWorkflows’ had non-zero exit status
>> library(CardinalWorkflows)
>Error in library(CardinalWorkflows) : 
>  there is no package called ‘CardinalWorkflows’
>*Please help. Thanks*
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>PLEASE do read the posting guide
>and provide commented, minimal, self-contained, reproducible code.

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