[BioC] Error while installing bioconductor on Unix machine
Jeff Gentry
jgentry at jimmy.harvard.edu
Thu May 8 11:56:54 MEST 2003
> [1] "Installing reposTools ..."
> /opt/statgen/R-1.6.1/bin/R: sh: not found
> Error in upDatePkgs(relLevel, PLATFORM, destdir,
> method = method) :
> Failed to install package Biobase
This to me looks like your R install is somehow
broken. getBioC() uses this to install the first few packages (in Unix):
cmd <- paste(file.path(R.home(), "bin", "R"),
"CMD INSTALL", fileName)
system(cmd)
Can you do this manually? IE /opt/statgen/R-1.6.1/bin/R CMD INSTALL XXX
where XXX is a source package?
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