May 2003 Archives by thread

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Starting: Thu May 1 10:28:07 MEST 2003
Ending: Sat May 31 06:00:02 MEST 2003
Messages: 236

• [BioC] ReadAffy problems   Dario Greco
  • [BioC] ReadAffy problems   Laurent Gautier
• [BioC] vignette feedback - HowTo: Automated Querying of PubMed Data   Lynn Young
• [BioC] Problem with VSN package AGAIN   Robert Gentleman
• [BioC] Installing bioconductor under MacOsx   Warnes, Gregory R
  • [BioC] Installing bioconductor under MacOsx   Robert Gentleman
• [BioC] Installing bioconductor under MacOsx   Warnes, Gregory R
  • [BioC] Installing bioconductor under MacOsx   Jeff Gentry
• [BioC] vignette feedback - HowTo: Automated Querying of PubMed Data   John Zhang
• [BioC] RAE230A CDF   pcboutro at engmail.uwaterloo.ca
• [BioC] Installing bioconductor under MacOsx   Martino Barenco
  • [BioC] Installing bioconductor under MacOsx   A.J. Rossini
  • [BioC] Installing bioconductor under MacOsx   Jeff Gentry
  • [BioC] Installing bioconductor under MacOsx   Byron Ellis
• [BioC] RMA() versus expresso with RMA options   James MacDonald
• [BioC] rma error on 48 mgu74av2 slides   Dick Beyer
• [BioC] gene annotation with annotate() function   Henrik Kinnemann
  • [BioC] gene annotation with annotate() function   Vincent Carey 525-2265
• [BioC] RMA() versus expresso with RMA options   cmprobst
  • [BioC] RMA() versus expresso with RMA options   Benjamin Milo BOLSTAD
• [BioC] HTTP POST in R, Unigene   James Wettenhall
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] rma error on 48 mgu74av2 slides   James MacDonald
• [BioC] drop the quote mark surround getBioC(libName = "all"), it is misl eading.   Fan, Wenhong
• [BioC] expresso errors for MBEI   Ann Hess
  • [BioC] expresso errors for MBEI   Laurent Gautier
• [BioC] error for library(affy): Error in if (e1[i] != e2[i]) return(TRUE) :...   Srikanth
  • [BioC] error for library(affy): Error in if (e1[i] != e2[i]) return(TRUE) :...   Jeff Gentry
• [BioC] ReadAffy(widget=TRUE) error in R 1.7.0 and affy 1.2.15   Dick Beyer
• [BioC] P values on Log or Non-Log Values   Park, Richard
• [BioC] P values on Log or Non-Log Values   James MacDonald
  • [BioC] P values on Log or Non-Log Values   Gordon Smyth
    • [BioC] P values on Log or Non-Log Values   w.huber at dkfz-heidelberg.de
• [BioC] se.exprs/signficance analysis   Ann Hess
  • [BioC] se.exprs/signficance analysis   Rafael A. Irizarry
• [BioC] Boxplots and Histograms of PM data   cmprobst
  • [BioC] Boxplots and Histograms of PM data   Rafael A. Irizarry
    • [BioC] Boxplots and Histograms of PM data   Laurent Gautier
• [BioC] scaling the mad (fwd)   Rafael A. Irizarry
• [BioC] memory error   Tapan Mehta
• [BioC] memory error   Tapan Mehta
  • [BioC] memory error   A.J. Rossini
• [BioC] affy normalization   David Rickman
  • [BioC] affy normalization   Laurent Gautier
• [BioC] limma missing files   Dick Beyer
  • [BioC] limma missing files   Gordon Smyth
    • [BioC] limma missing files   Dick Beyer
• [BioC] (no subject)   Yongde Bao
• [BioC] memory error   alessandro.semeria at cramont.it
• [BioC] expresso errors for MBEI   Ann Hess
  • [BioC] expresso errors for MBEI   Rafael A. Irizarry
    • [BioC] expresso errors for MBEI   Ann Hess
      • [BioC] expresso errors for MBEI   Laurent Gautier
    • [BioC] expresso errors for MBEI   Rafael A. Irizarry
      • [BioC] expresso errors for MBEI   Rafael A. Irizarry
• [BioC] Ned cdf packae for ATH1   James MacDonald
• [BioC] Ned cdf packae for ATH1   Norman Warthmann
• [BioC] data() function problem   ZRG (Zeren Gao)
• [BioC] Error while installing bioconductor on Unix machine   Tapan Mehta
  • [BioC] Error while installing bioconductor on Unix machine   Jeff Gentry
• [BioC] data() function problem   John Zhang
• [BioC] data() function problem   ZRG (Zeren Gao)
• [BioC] RMA identical expression values   Alessandra Luchini
• [BioC] Bioconductor on Unix: cannot load the library affy   Duhaime Johanne
  • [BioC] Bioconductor on Unix: cannot load the library affy   Jeff Gentry
    • [BioC] Bioconductor on Unix: cannot load the library affy   Ramon Diaz
      • [BioC] Bioconductor on Unix: cannot load the library affy   Jeff Gentry
• [BioC] Memory limit on Window with affy chips   Duhaime Johanne
  • [BioC] Memory limit on Window with affy chips   Laurent Gautier
• [BioC] data() function problem   John Zhang
• [BioC] Bioconductor on Unix: cannot load the library affy   Duhaime Johanne
  • Install problems with BioC (was Re: [BioC] Bioconductor on Unix: cannot load the library affy)   Ramon Diaz
    • Install problems with BioC (was Re: [BioC] Bioconductor on Unix: cannot load the library affy)   Jeff Gentry
      • Install problems with BioC (was Re: [BioC] Bioconductor on Unix: cannot load the library affy)   Ramon Diaz
      • Install problems with BioC (was Re: [BioC] Bioconductor on Unix: cannot load the library affy)   Jeff Gentry
      • Install problems with BioC (was Re: [BioC] Bioconductor on Unix: cannot load the library affy)   Ramon Diaz
• [BioC] Training session   Joshi, Nina (NIH/NCI)
  • [BioC] Training session   Vincent Carey 525-2265
• [BioC] Bioconductor on Unix: cannot load the library affy   Duhaime Johanne
• [BioC] data() function problem   ZRG (Zeren Gao)
• [BioC] Macintosh package bundle (R 1.6.1) and (R 1.6.2)   Philippe Dessen
  • [BioC] Macintosh package bundle (R 1.6.1) and (R 1.6.2)   Jeff Gentry
• [BioC] data() function problem   John Zhang
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] warnings with affy package   Phguardiol at aol.com
  • [BioC] warnings with affy package   Rafael A. Irizarry
• [BioC] (no subject)   Knud Josefsen
  • [BioC] (no subject)   Rafael A. Irizarry
• [BioC] expresso errors for MBEI (fwd)   Ann Hess
• [BioC] heatmap colours   Warnes, Gregory R
• [BioC] heatmap colours   Stephen Henderson
  • [BioC] heatmap colours   Jean Yee Hwa Yang
    • [BioC] heatmap colours   Johannes Hüsing
      • [BioC] heatmap colours   Robert Gentleman
      • [BioC] heatmap colours   Johannes Hüsing
      • [BioC] heatmap colours   Byron Ellis
• [BioC] Re: error in expresso, why..?   Knud Josefsen
• [BioC] Sample names with ExprSet   cmprobst
  • [BioC] Sample names with ExprSet   Rafael A. Irizarry
• [BioC] Release 1.2 on May 28th   Jeff Gentry
• [BioC] Error loading reposTools   Warnes, Gregory R
  • [BioC] Error loading reposTools   Jeff Gentry
• [BioC] Error loading reposTools   Warnes, Gregory R
  • [BioC] Error loading reposTools   Jeff Gentry
• [BioC] affy package   Clementine.BODY at eu.biomerieux.com
• [BioC] Last call for Spring Affy Software Developers' Conferences   DevNet
• [BioC] problem with "Tutorial for Bioconductor's marrayClasses package"   Rob Dunne
• [BioC] Question about the MAS5 implementation in affy package.   Joachim.Theilhaber at aventis.com
• [BioC] Warning message using ReadAffy()   raffaele calogero
  • [BioC] Warning message using ReadAffy()   Rafael A. Irizarry
• [BioC] How to unzip the software demo for the short course: Statistical Methods and Software for the Analysis of DNA Microarray Experiments   SHEN, WEICHENG .
  • [BioC] How to unzip the software demo for the short course: Statistical Methods and Software for the Analysis of DNA Microarray Experiments   Sandrine Dudoit
• [BioC] using less memory with 'affy'   Laurent Gautier
• [BioC] (no subject)   rinku saha
  • [BioC] (no subject)   Laurent Gautier
• [BioC] Re: annotate / get   John Zhang
• [BioC] function within a function body?   SHEN, WEICHENG .
  • [BioC] function within a function body?   Robert Gentleman
  • [BioC] function within a function body?   w.huber at dkfz-heidelberg.de
• [BioC] Update Packages from Bioconductor Error   pcboutro at engmail.uwaterloo.ca
• [BioC] bad region on slides   Rob Dunne
• [BioC] Re: annotate / get   Knud Josefsen
• [BioC] Question about MAS5 implementation in Affy package   Dapeng.Xu at aventis.com
  • [BioC] Question about MAS5 implementation in Affy package   Rafael A. Irizarry
• [BioC] clustering of genes   Gordon Smyth
  • [BioC] clustering of genes   Laurent Gautier
  • [BioC] clustering of genes   w.huber at dkfz-heidelberg.de
• [BioC] Basic question re: multiple testing   Claire Wilson
  • [BioC] Basic question re: multiple testing   A.J. Rossini
• [BioC] LiWong   Raghu burri
  • [BioC] LiWong   Rafael A. Irizarry
• [BioC] affy normalization   Matthew Hobbs
• [BioC] affy normalization   Matthew Hobbs
• [BioC] Basic question re: multiple testing   Adaikalavan Ramasamy
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Call for Papers: 2003 Affymetrix GeneChip Microarray Low-level An alysis Workshop (fwd)   Rafael A. Irizarry
• [BioC] affycomp   Rafael A. Irizarry
• [BioC] Error wile reading .CEL files   Tapan Mehta
  • [BioC] Error wile reading .CEL files   w.huber at dkfz-heidelberg.de
    • [BioC] Error wile reading .CEL files   Tapan Mehta
      • [BioC] Error wile reading .CEL files   Jeff Gentry
      • [BioC] Error wile reading .CEL files   Tapan Mehta
      • [BioC] Error wile reading .CEL files   w.huber at dkfz-heidelberg.de
• [BioC] program not responding   Lang Chen
• [BioC] Program No Responding   Lang Chen
  • [BioC] Program No Responding   A.J. Rossini
• [BioC] Error message when trying to ReadAffy with widgets function: help, please?   John Zhang
• [BioC] Error message when trying to ReadAffy with widgets function: help, please?_Part 2   John Zhang
  • [BioC] Error with ReadAffy   Isaac Neuhaus
    • [BioC] Error with ReadAffy   Rafael A. Irizarry
      • [BioC] Error with ReadAffy   Isaac Neuhaus
      • [BioC] Error with ReadAffy   Laurent Gautier
      • [BioC] Error with ReadAffy   Isaac Neuhaus
• [BioC] Expression values using RMA   Martino Barenco
  • [BioC] Expression values using RMA   Ben Bolstad
• [BioC] p-values   Richard Hartley
  • [BioC] p-values   Robert Gentleman
    • [BioC] Experimental Design   Isaac Neuhaus
• [BioC] Error message when trying to ReadAffy with widgets function: help, please?   Fátima Núñez
• [BioC] FW: p-values   Richard Hartley
• [BioC] Bioconductor   Claire Wilson
  • [BioC] Bioconductor   Laurent Gautier
• [BioC] FW: p-values   Claire Wilson
• [BioC] Error message when trying to ReadAffy with widgets function: help, please?_Part 2   Fátima Núñez
• [BioC] Error message when trying to ReadAffy with widgetsfunction:help, please?_Part 2   Fátima Núñez
• [BioC] How to conditionally exit from a function?   SHEN, WEICHENG .
  • [BioC] How to conditionally exit from a function?   Robert Gentleman
• [BioC] LocusLink query problem / bioC basic tutorial   Huang, Cheng-Cheng (NIH/NCI)
  • [BioC] LocusLink query problem / bioC basic tutorial   Robert Gentleman
  • [BioC] reducing gene number in affybatch objects   Hinnerk Boriss
    • [BioC] reducing gene number in affybatch objects   Laurent Gautier
      • [BioC] reducing gene number in affybatch objects   Rafael A. Irizarry
      • [BioC] reducing gene number in affybatch objects   Hinnerk Boriss
      • [BioC] reducing gene number in affybatch objects   Rafael A. Irizarry
      • [BioC] reducing gene number in affybatch objects   Laurent Gautier
      • [BioC] reducing gene number in affybatch objects   Rafael A. Irizarry
      • [BioC] reducing gene number in affybatch objects   Hinnerk Boriss
• [BioC] affycomp/GeneLogic Data   Ann Hess
  • [BioC] affycomp/GeneLogic Data   laurent buffat
    • [BioC] affycomp/GeneLogic Data   Rafael A. Irizarry
    • [BioC] affycomp/GeneLogic Data   Rafael A. Irizarry
      • [BioC] affycomp/GeneLogic Data   laurent buffat
• [BioC] Variance of M as a function of A in MA plots   Andrew Harrison
  • [BioC] Variance of M as a function of A in MA plots   Susan Holmes
  • [BioC] Variance of M as a function of A in MA plots   Rafael A. Irizarry
• [BioC] p-values   alessandro.semeria at cramont.it
• [BioC] http://bioconductor.org/data/dataRepos/mgu74a_1.2.6.tar.gz   Lynn
• [BioC] Replicate Analysis   Park, Richard
• [BioC] http://bioconductor.org/data/dataRepos/mgu74a_1.2.6.tar.gz   John Zhang
• [BioC] A Biologists Guide to using Bioconductor   Gordon Smyth
• [BioC] A Biologists Guide to using Bioconductor   Gordon Smyth
  • [BioC] A Biologists Guide to using Bioconductor   Rafael A. Irizarry
• [BioC] Reminder: Release 1.2 on May 28th   Jeff Gentry
• [BioC] Bioconductor installation   Liang-Hao ding
• [BioC] getBioC and R configuration problem   Ron Ophir
  • [BioC] getBioC and R configuration problem   Jeff Gentry
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] getBioC and R configuration problem   alessandro.semeria at cramont.it
• [BioC] queries regarding bioconductor installation   Stephen Eglen
• [BioC] Two way ANOVA with bioconductor.   Alex F. Bokov
  • [BioC] Two way ANOVA with bioconductor.   A.J. Rossini
• [BioC] RMA expression with MAS P/A flags   Sue Kong
• [BioC] Two way ANOVA with bioconductor.   Alex F. Bokov
  • [BioC] Two way ANOVA with bioconductor.   A.J. Rossini
  • [BioC] Two way ANOVA with bioconductor.   Susan Holmes
• [BioC] Busted moe430 win32 cdfenv links   James MacDonald
  • [BioC] Busted moe430 win32 cdfenv links   Jeff Gentry
• [BioC] Data formats   Culhane, Aedin
  • [BioC] Data formats   Vincent Carey 525-2265
• [BioC] 1.2 release of Windows binaries?   Tucker-Kellogg, Gregory
  • [BioC] 1.2 release of Windows binaries?   Jeff Gentry
• [BioC] Bioconductor 1.2 Released   Jeff Gentry
• [BioC] Problems installing v 1.2   Lapointe, David
  • [BioC] Problems installing v 1.2   A.J. Rossini
  • [BioC] Problems installing v 1.2   Jeff Gentry
• [BioC] Problems installing v 1.2   Christopher Wilkinson
  • [BioC] Problems installing v 1.2   Jeff Gentry
• [BioC] Biobase/BioBase capitalization user errors in Windows   James Wettenhall
  • [BioC] Biobase/BioBase capitalization user errors in Windows   Jeff Gentry
• [BioC] esApply puzzler   Stephen Henderson
• [BioC] Two questions   Cappola, Thomas
  • [BioC] Two questions   Rafael A. Irizarry
• [BioC] loading affy cdf files   Nancy Petersen
• [BioC] bioconductor vs dchip   Qi.Zhang at astrazeneca.com
  • [BioC] bioconductor vs dchip   Rafael A. Irizarry
• [BioC] R   Lukas Jeker
• [BioC] Treatment vs. Control in cDNA Dye Swap Experiment   White, Charles E WRAIR-Wash DC
  • [BioC] Treatment vs. Control in cDNA Dye Swap Experiment   Jean Yee Hwa Yang
• [BioC] using geneplotter with my own data   Matthew Hobbs
  • [BioC] using geneplotter with my own data   Jeff Gentry
• [BioC] how to get expression data and output them   Lang Chen
  • [BioC] how to get expression data and output them   Jean Yee Hwa Yang
• [BioC] replicates and low expression levels   Crispin Miller
  • [BioC] replicates and low expression levels   Rafael A. Irizarry
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu

Last message date: Sat May 31 06:00:02 MEST 2003
Archived on: Thu Aug 28 09:33:59 MEST 2003

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