August 2011 Archives by author

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Starting: Mon Aug 1 06:55:14 CEST 2011
Ending: Wed Aug 31 19:24:46 CEST 2011
Messages: 399

• [BioC] Post-doctoral research fellowships in bioinformatics, Vienna, Austria and/or Brno, Czech Republic, 3-5 years   Dr. D. P. Kreil (Boku)
• [BioC] R: problem with the KEGGSOAP package   Manca Marco (PATH)
• [BioC] R: organism abbreviations (SPIA package)   Manca Marco (PATH)
• [BioC] clustering of probe id   sanchita 0804
• [BioC] edgeR: handling missing values with Quantile normalisation   ALok
• [BioC] SimpleAffy qc step for custom CDF files   Ahmed, Rizwan
• [BioC] Beijing and Los Angeles Human NGS Biostatistics/Bioinformatics jobs   Allen Day, PhD
• [BioC] DEGseq example in documentation   Sonja Althammer
• [BioC] DEGseq example in documentation   Sonja Althammer
• [BioC] Where is DEXSeq bioconductor package?   Simon Anders
• [BioC] Where is DEXSeq bioconductor package?   Simon Anders
• [BioC] Where is DEXSeq bioconductor package?   Simon Anders
• [BioC] DESeq multifactor GLM Error attributed to zero counts (coded as NA) in dataset?   Simon Anders
• [BioC] DESeq: nbinomTest question   Simon Anders
• [BioC] question regarding RMA on 2 different U133 platforms   James Anderson
• [BioC] Are bioconductor packages designed for enrichment analysis affected by KEGG privatization ?   Radhouane Aniba
• [BioC] bug in rendering reciprocal edges?   Wouter van Atteveldt
• [BioC] bug in rendering reciprocal edges?   Wouter van Atteveldt
• [BioC] Bioinformatics position in CIAT, Colombia   Sarah Ayling
• [BioC] wishlist for readGappedAlignments   Cory Barr
• [BioC] limma contrast matrix   Belmont, John W
• [BioC] Question about 'updateCel' from package 'affxparser'   Henrik Bengtsson
• [BioC] FlowQ   Bennett, Brian
• [BioC] Can we apply WGCNA to RNA-seq dataset?   Biase, Fernando Henrique
• [BioC] CRLMM warning message and null results   Jenna Cameron
• [BioC] ontoCompare (goTools) : goidvect error   Vincent Carey
• [BioC] ontoCompare (goTools) : goidvect error   Vincent Carey
• [BioC] ontoCompare (goTools) : goidvect error   Vincent Carey
• [BioC] Unable to read Affy Mouse Exon 1.0 ST array CEL file   Vincent Carey
• [BioC] To find rsIDs   Vincent Carey
• [BioC] GEOquery: how to extract experimental data? (confused)   Vincent Carey
• [BioC] FlowQ   Vincent Carey
• [BioC] Biocinstall   Vincent Carey
• [BioC] Are bioconductor packages designed for enrichment analysis affected by KEGG privatization ?   Marc Carlson
• [BioC] R: problem with the KEGGSOAP package   Marc Carlson
• [BioC] GOstats with Reactome database?   Marc Carlson
• [BioC] annotation package ?   Marc Carlson
• [BioC] annotation package ?   Marc Carlson
• [BioC] How to merge to two cel objects imported by oligo package   Benilton Carvalho
• [BioC] How to merge to two cel objects imported by oligo package   Benilton Carvalho
• [BioC] CRLMM warning message and null results   Benilton Carvalho
• [BioC] Illumina CytoSNP-12 CDF file for crlmm   Benilton Carvalho
• [BioC] sva package for R 2.13.1?   Ying Chen
• [BioC] sva package for R 2.13.1?   Ying Chen
• [BioC] EBImage crop failure   Michael Cole
• [BioC] Limma Correlation Coefficient   Michael Considine
• [BioC] shortread readAligned with BWA   Nathalie Conte
• [BioC] creating a UniprotIdentifier within GSEABase   Mark Cowley
• [BioC] two-day conference "Statistical Analyses for Next Generation Sequencing"   Xiangqin Cui
• [BioC] Unable to read Affy Mouse Exon 1.0 ST array CEL file   Dai, Hongying,
• [BioC] How to merge to two cel objects imported by oligo package   Dai, Hongying,
• [BioC] How to merge to two cel objects imported by oligo package   Dai, Hongying,
• [BioC] How to merge to two cel objects imported by oligo package   Dai, Hongying,
• [BioC] GEOquery: how to extract experimental data? (confused)   Dai, Hongying,
• [BioC] Analyze Single Color Agilent Microarray Data   Sean Davis
• [BioC] Analyze Single Color Agilent Microarray Data   Sean Davis
• [BioC] Where is DEXSeq bioconductor package?   Sean Davis
• [BioC] Where is DEXSeq bioconductor package?   Sean Davis
• [BioC] Where is DEXSeq bioconductor package?   Sean Davis
• [BioC] lumi package, nuIDs and Agilent, Affymetrix   Sean Davis
• [BioC] single color using Limma : very low p-value "1.40456052121752e-60"   Sean Davis
• [BioC] plotrix - install is failing   Sean Davis
• [BioC] GEOquery: how to extract experimental data? (confused)   Sean Davis
• [BioC] sva package for R 2.13.1?   Sean Davis
• [BioC] Differential expression analysis of DESeq   Sean Davis
• [BioC] sva package for R 2.13.1?   Sean Davis
• [BioC] a question for SPIA package   Sean Davis
• [BioC] annotation package ?   Sean Davis
• [BioC] normalization one color microarrays   Sean Davis
• [BioC] normalization one color microarrays   Sean Davis
• [BioC] GEOquery package   Sean Davis
• [BioC] topTable (fit) annotation   Sean Davis
• [BioC] topTable (fit) annotation   Sean Davis
• [BioC] Plot signal distribution in miRNA arrays   Davis, Wade
• [BioC] Plot signal distribution in miRNA arrays   Davis, Wade
• [BioC] getBM returns error   Steffen Durinck
• [BioC] loading AB OpenArray qPCR data in HTqPCR   Heidi Dvinge
• [BioC] RIP/CLIP-seq   Mercier Eloi
• [BioC] LIMMA: paired samples and common reference?   Enx Enx
• [BioC] biomaRt and HapMap   Lasse F
• [BioC] FlowQ   Finak, Greg
• [BioC] How to output Normalised count data from DESeq?   Andreia Fonseca
• [BioC] chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO   Andreia Fonseca
• [BioC] help needed in namespace definition   Frederic Fournier
• [BioC] pckg Resourcerer : can't read "affy_HG-U133_Plus_2.zip" with getResourcerer()   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] getBM returns error   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] GEOquery: how to extract experimental data? (confused)   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] question on library(mgu74av2.db) for SPIA package application   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] question on SPIA pavkage application   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] normalization one color microarrays   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] normalization one color microarrays   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] normalization one color microarrays   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] GEOquery package   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] topTable (fit) annotation   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] affylmGUI annotations   Richard Friedman
• [BioC] org.Bt.eg.db / annotation problem   Iain Gallagher
• [BioC] org.Bt.eg.db / annotation problem   Iain Gallagher
• [BioC] baySeq issues   Iain Gallagher
• [BioC] Question about quantile normalization   Laurent Gautier
• [BioC] normalization one color microarrays   Laurent Gautier
• [BioC] Plot signal distribution in miRNA arrays   Paul Geeleher
• [BioC] 'gpls' package, principle component loadings   Robert Gentleman
• [BioC] ontoCompare (goTools) : goidvect error   Robert Gentleman
• [BioC] ontoCompare (goTools) : goidvect error   Robert Gentleman
• [BioC] Probe-level analysis of exon arrays using xps   Lavorgna Giovanni
• [BioC] R: Probe-level analysis of exon arrays using xps   Lavorgna Giovanni
• [BioC] R: R: Probe-level analysis of exon arrays using xps   Lavorgna Giovanni
• [BioC] HPC/Linux Systems Administrator Position   Thomas Girke
• [BioC] bug in rendering reciprocal edges?   Nishant Gopalakrishnan
• [BioC] single color using Limma : very low p-value "1.40456052121752e-60"   Alex Gutteridge
• [BioC] a question on SPIA package   Alex Gutteridge
• [BioC] question on SPIA pavkage application   Alex Gutteridge
• [BioC] mRNA-seq cross-species analysis, is it possible?   Kasper Daniel Hansen
• [BioC] sva package for R 2.13.1?   Kasper Daniel Hansen
• [BioC] Rgraphviz error : R- GUI Crashes on using plot()   Kasper Daniel Hansen
• [BioC] Limma Correlation Coefficient   Kasper Daniel Hansen
• [BioC] Rgraphviz error : R- GUI Crashes on using plot()   Kasper Daniel Hansen
• [BioC] rtracklayer::liftOver ordering   Kasper Daniel Hansen
• [BioC] rtracklayer::liftOver ordering   Kasper Daniel Hansen
• [BioC] mRNA-seq cross-species analysis, is it possible?   Thomas J Hardcastle
• [BioC] GOstats with Reactome database?   Robin Haw
• [BioC] lumi package, nuIDs and Agilent, Affymetrix   Andreas Heider
• [BioC] lumi package, nuIDs and Agilent, Affymetrix   Andreas Heider
• [BioC] matchPDict with mismatches allowed appears to drop names   Ian Henry
• [BioC] Probe matching using vmatchPDict   Ian Henry
• [BioC] matchPDict with mismatches allowed appears to drop names   Ian Henry
• [BioC] matchPDict with mismatches allowed appears to drop names   Ian Henry
• [BioC] loading AB OpenArray qPCR data in HTqPCR   Hooiveld, Guido
• [BioC] limma: paired analysis & effects on/interpretation of coefficients   Hooiveld, Guido
• [BioC] limma: paired analysis & effects on/interpretation of coefficients   Hooiveld, Guido
• [BioC] getBM returns error   Hans-Rudolf Hotz
• [BioC] a question on SPIA package   Jing Huang
• [BioC] a question for SPIA package   Jing Huang
• [BioC] annotation package ?   Jing Huang
• [BioC] annotation package ?   Jing Huang
• [BioC] organism abbreviations (SPIA package)   Jing Huang
• [BioC] organism abbreviations (SPIA package)   Jing Huang
• [BioC] question on library(mgu74av2.db) for SPIA package application   Jing Huang
• [BioC] question on SPIA pavkage application   Jing Huang
• [BioC] GEOquery package   Jing Huang
• [BioC] topTable (fit) annotation   Jing Huang
• [BioC] microarray data analysis treatments and design   Jing Huang
• [BioC] topTable (fit) annotation   Jing Huang
• [BioC] topTable (fit) annotation   Jing Huang
• [BioC] topTable (fit) annotation   Jing Huang
• [BioC] Where is DEXSeq bioconductor package?   Jinyan Huang
• [BioC] DEGseq example in documentation   Wolfgang Huber
• [BioC] DESeq multifactor GLM Error attributed to zero counts (coded as NA) in dataset?   Wolfgang Huber
• [BioC] How to output Normalised count data from DESeq?   Wolfgang Huber
• [BioC] Limma Correlation Coefficient   Wolfgang Huber
• [BioC] Differential expression analysis of DESeq   Wolfgang Huber
• [BioC] Faster way to apply a function than endoapply on 40K GrangesList   Lakshmanan Iyer
• [BioC] Question about quantile normalization   K J
• [BioC] rtracklayer::liftOver ordering   Andrew Jaffe
• [BioC] matchPDict with mismatches allowed appears to drop names   Harris A. Jaffee
• [BioC] matchPDict with mismatches allowed appears to drop names   Harris A. Jaffee
• [BioC] Adding multiple gates/filters in densityplot [flowViz]   Michael Jahn
• [BioC] New version of rGADEM - ChIP-Seq, de novo motif discovery   Charles Joly
• [BioC] Job Adverts: One biostats, one next gen sequencing   Gavin Kelly
• [BioC] problem with the KEGGSOAP package   Naharajan Lakshmanaperumal
• [BioC] R: problem with the KEGGSOAP package   Lapointe, David
• [BioC] Faster way to apply a function than endoapply on 40K GrangesList   Michael Lawrence
• [BioC] Faster way to apply a function than endoapply on 40K GrangesList   Michael Lawrence
• [BioC] import.bw to Rle?   Michael Lawrence
• [BioC] views on Rle using GRanges object   Michael Lawrence
• [BioC] views on Rle using GRanges object   Michael Lawrence
• [BioC] rtracklayer import.bw on gz file makes R crash   Michael Lawrence
• [BioC] views on Rle using GRanges object   Michael Lawrence
• [BioC] views on Rle using GRanges object   Michael Lawrence
• [BioC] rtracklayer::liftOver ordering   Michael Lawrence
• [BioC] rtracklayer::liftOver ordering   Michael Lawrence
• [BioC] rtracklayer::liftOver ordering   Michael Lawrence
• [BioC] rtracklayer import.bed pipe inconsistency   Michael Lawrence
• [BioC] rtracklayer import.bed pipe inconsistency   Michael Lawrence
• [BioC] edgeR: handling missing values with Quantile normalisation   Paul Leo
• [BioC] Problem with Biostrings   Guido Leoni
• [BioC] Problem with Biostrings   Guido Leoni
• [BioC] limma::read.maimages on different chips   Yong Li
• [BioC] Head of Junior Research Group - Bioinformatics   Qiong Lin
• [BioC] org.Bt.eg.db / annotation problem   Jason Lu
• [BioC] read counts in sliding windows   Jason Lu
• [BioC] Simple GO pie and GOSim install error   Olivier Lucas
• [BioC] what is the correct way of normalizing 3 different U133 platforms using RMA?   Jack Luo
• [BioC] what is the correct way of normalizing 3 different U133 platforms using RMA?   Jack Luo
• [BioC] clustering of probe id   James W. MacDonald
• [BioC] Potential bug when finding baseline array in normalize.AffyBatch.invariantset   James W. MacDonald
• [BioC] question regarding RMA on 2 different U133 platforms   James W. MacDonald
• [BioC] plotrix - install is failing   James W. MacDonald
• [BioC] what is the correct way of normalizing 3 different U133 platforms using RMA?   James W. MacDonald
• [BioC] sva package for R 2.13.1?   James W. MacDonald
• [BioC] biomart query: ensembl gene id and entrez gene id confusion   James W. MacDonald
• [BioC] affylmGUI annotations   James W. MacDonald
• [BioC] Biocinstall   James W. MacDonald
• [BioC] question on library(mgu74av2.db) for SPIA package application   James W. MacDonald
• [BioC] Biocinstall   James W. MacDonald
• [BioC] limma: paired analysis & effects on/interpretation of coefficients   James W. MacDonald
• [BioC] limma: paired analysis & effects on/interpretation of coefficients   James W. MacDonald
• [BioC] backgroundCorrect offset value   James W. MacDonald
• [BioC] backgroundCorrect offset value   James W. MacDonald
• [BioC] median normalization   James W. MacDonald
• [BioC] median normalization   James W. MacDonald
• [BioC] mRNA-seq cross-species analysis, is it possible?   Davis McCarthy
• [BioC] mRNA-seq cross-species analysis, is it possible?   Davis McCarthy
• [BioC] PhD student in Bioinformatics, Computational Biology at Technical University of Munich, Germany   Amin Moghaddasi
• [BioC] creating a UniprotIdentifier within GSEABase   Martin Morgan
• [BioC] wishlist for readGappedAlignments   Martin Morgan
• [BioC] Faster way to apply a function than endoapply on 40K GrangesList   Martin Morgan
• [BioC] GOstats with Reactome database?   Martin Morgan
• [BioC] shortread readAligned with BWA   Martin Morgan
• [BioC] RIP/CLIP-seq   Martin Morgan
• [BioC] Error in applying mt.teststat in multtest package   Martin Morgan
• [BioC] wishlist for readGappedAlignments   Martin Morgan
• [BioC] Problem with Biostrings   Martin Morgan
• [BioC] justRMA {affy} error   Martin Morgan
• [BioC] Beadarray: bead-level data, background intensities   Mueller, Alan
• [BioC] PGSEA and smcPlot   Valerie Obenchain
• [BioC] matching sRNA sequences with whole data   Valerie Obenchain
• [BioC] FW: GEOquery package   Ochsner, Scott A
• [BioC] matchPDict with mismatches allowed appears to drop names   Hervé Pagès
• [BioC] Fwd: Probe matching using vmatchPDict   Hervé Pagès
• [BioC] Probe matching using vmatchPDict   Hervé Pagès
• [BioC] matchPDict with mismatches allowed appears to drop names   Hervé Pagès
• [BioC] matchPDict with mismatches allowed appears to drop names   Hervé Pagès
• [BioC] wishlist for readGappedAlignments   Hervé Pagès
• [BioC] Faster way to apply a function than endoapply on 40K GrangesList   Hervé Pagès
• [BioC] Faster way to apply a function than endoapply on 40K GrangesList   Hervé Pagès
• [BioC] A question about the coordinate system in the yeast database   Hervé Pagès
• [BioC] compare IC50 in DRC package   Hervé Pagès
• [BioC] read counts in sliding windows   Hervé Pagès
• [BioC] align microRNA with custom mRNA sequences   Hervé Pagès
• [BioC] help needed in namespace definition   Hervé Pagès
• [BioC] Extarcting large number of sequences using BSgenome package   Hervé Pagès
• [BioC] views on Rle using GRanges object   Hervé Pagès
• [BioC] views on Rle using GRanges object   Hervé Pagès
• [BioC] views on Rle using GRanges object   Hervé Pagès
• [BioC] unique, duplicated, order, etc... on a GRanges object   Hervé Pagès
• [BioC] biomart error   Hervé Pagès
• [BioC] biomart error   Hervé Pagès
• [BioC] Extarcting large number of sequences using BSgenome package   Hervé Pagès
• [BioC] biomart error   Hervé Pagès
• [BioC] rtracklayer::liftOver ordering   Hervé Pagès
• [BioC] 'gpls' package, principle component loadings   Ignatius Pang
• [BioC] 'gpls' package, principle component loadings   Ignatius Pang
• [BioC] limma::read.maimages on different chips   Brent Pedersen
• [BioC] Rgraphviz error : R- GUI Crashes on using plot()   Saurabh Prasad
• [BioC] Rgraphviz error : R- GUI Crashes on using plot()   Saurabh Prasad
• [BioC] Package Rsamtools_1.0.8.tar.gz has been checked and built   Uwe.Ligges at R-Project.org
• [BioC] Error in` [. Data.frame `(obj, , columns [[a]]): undefined columns selected"   Paz Tapia Ramirez
• [BioC] Error in` [. Data.frame `(obj, , columns [[a]]): undefined columns selected"   Paz Tapia Ramirez
• [BioC] boxplot   Paz Tapia Ramirez
• [BioC] normalization one color microarrays   Paz Tapia Ramirez
• [BioC] normalization one color microarrays   Paz Tapia Ramirez
• [BioC] normalization one color microarrays   Paz Tapia Ramirez
• [BioC] normalization one color microarrays   Paz Tapia Ramirez
• [BioC] FW: normalization one color microarrays   Paz Tapia Ramirez
• [BioC] lumi, Illumina Methylation 450k, and robust methylation calls   Tim Rayner
• [BioC] justRMA {affy} error   Julio Alejandro Di Rienzo
• [BioC] Illumina CytoSNP-12 CDF file for crlmm   Stephen Rudd
• [BioC] biomart error   Natasha Sahgal
• [BioC] biomart error   Natasha Sahgal
• [BioC] biomart error   Natasha Sahgal
• [BioC] biomart query: ensembl gene id and entrez gene id confusion   Natasha Sahgal
• [BioC] DESeq: nbinomTest question   Natasha Sahgal
• [BioC] Opportunity: PhD in BIOINFORMATICS at SZN, Naples, Italy   Remo Sanges
• [BioC] rtracklayer import.bed pipe inconsistency   Nathan Sheffield
• [BioC] rtracklayer import.bed pipe inconsistency   Nathan Sheffield
• [BioC] backgroundCorrect offset value   Wei Shi
• [BioC] backgroundCorrect offset value   Prasad Siddavatam
• [BioC] backgroundCorrect offset value   Prasad Siddavatam
• [BioC] backgroundCorrect offset value   Prasad Siddavatam
• [BioC] backgroundCorrect offset value   Prasad Siddavatam
• [BioC] backgroundCorrect offset value   Prasad Siddavatam
• [BioC] affylmGUI annotations   Ed Siefker
• [BioC] xps: root scheme annotations   Ed Siefker
• [BioC] Beadarray: bead-level data, background intensities   Mike Smith
• [BioC] [limma] Strange results in contrasts with dye-swap   Gordon K Smyth
• [BioC] [limma] Strange results in contrasts with dye-swap   Gordon K Smyth
• [BioC] [limma] 0 weights = removed from analysis?   Gordon K Smyth
• [BioC] backgroundCorrect offset value   Gordon K Smyth
• [BioC] backgroundCorrect offset value   Gordon K Smyth
• [BioC] Analyze Single Color Agilent Microarray Data   Srinivas M. Srikanth
• [BioC] Analyze Single Color Agilent Microarray Data   Srinivas M. Srikanth
• [BioC] Missing values - metaArray, GeneMeta, RankProd, metahdep   John Stevens
• [BioC] beadarray error   Straubhaar, Juerg
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Dan Tenenbaum
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Dan Tenenbaum
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Dan Tenenbaum
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Dan Tenenbaum
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Dan Tenenbaum
• [BioC] Rgraphviz error : R- GUI Crashes on using plot()   Dan Tenenbaum
• [BioC] Biocinstall   Dan Tenenbaum
• [BioC] Biocinstall   Dan Tenenbaum
• [BioC] Rgraphviz error : R- GUI Crashes on using plot()   Dan Tenenbaum
• [BioC] pckg Resourcerer : can't read "affy_HG-U133_Plus_2.zip" with getResourcerer()   Guillaume Tiberi
• [BioC] Probe ID to Sequence   Tim Triche, Jr.
• [BioC] Probe ID to Sequence   Tim Triche, Jr.
• [BioC] Probe ID to Sequence   Tim Triche, Jr.
• [BioC] Probe ID to Sequence   Tim Triche, Jr.
• [BioC] To find rsIDs   Tim Triche, Jr.
• [BioC] sva package for R 2.13.1?   Tim Triche, Jr.
• [BioC] sva package for R 2.13.1?   Tim Triche, Jr.
• [BioC] eBayes vs. anova   Tim Triche, Jr.
• [BioC] Where is DEXSeq bioconductor package?   Fabrice Tourre
• [BioC] Where is DEXSeq bioconductor package?   Fabrice Tourre
• [BioC] Where is DEXSeq bioconductor package?   Fabrice Tourre
• [BioC] How to output Normalised count data from DESeq?   Fabrice Tourre
• [BioC] edgeR: handling missing values with Quantile normalisation   Sonika Tyagi
• [BioC] ontoCompare (goTools) : goidvect error   Oana VIGY
• [BioC] ontoCompare (goTools) : goidvect error   Oana VIGY
• [BioC] ontoCompare (goTools) : goidvect error   Oana VIGY
• [BioC] ontoCompare (goTools) : goidvect error   Oana VIGY
• [BioC] ontoCompare (goTools) : goidvect error   Oana VIGY
• [BioC] DESeq multifactor GLM Error attributed to zero counts (coded as NA) in dataset?   Steve Vollmer
• [BioC] Rgraphviz and custom nodes   Karl Weber
• [BioC] Biological replicates with Gage   Luo Weijun
• [BioC] GAGE package help required   Luo Weijun
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Quin Wills
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Quin Wills
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Quin Wills
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Quin Wills
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Quin Wills
• [BioC] EBS volumes with the Bioconductor AMI: how to change default behaviour   Quin Wills
• [BioC] Probe ID to Sequence   Wong, Chao-Jen
• [BioC] Probe ID to Sequence   Wong, Chao-Jen
• [BioC] pckg Resourcerer : can't read "affy_HG-U133_Plus_2.zip" with getResourcerer()   Wong, Chao-Jen
• [BioC] getBM returns error   Wasco Wruck
• [BioC] getBM returns error   Wasco Wruck
• [BioC] getBM returns error   Wasco Wruck
• [BioC] readGappedAlignments example error message   Tengfei Yin
• [BioC] readGappedAlignments example error message   Tengfei Yin
• [BioC] wishlist for readGappedAlignments   Tengfei Yin
• [BioC] wishlist for readGappedAlignments   Tengfei Yin
• [BioC] wishlist for readGappedAlignments   Tengfei Yin
• [BioC] rtracklayer import.bw on gz file makes R crash   Janet Young
• [BioC] import.bw to Rle?   Janet Young
• [BioC] import.bw to Rle?   Janet Young
• [BioC] views on Rle using GRanges object   Janet Young
• [BioC] views on Rle using GRanges object   Janet Young
• [BioC] A question about the coordinate system in the yeast database   Xuekui Zhang
• [BioC] chippeakanno related   Zhu, Lihua (Julie)
• [BioC] chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO   Zhu, Lihua (Julie)
• [BioC] chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO   Zhu, Lihua (Julie)
• [BioC] chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno, getAnnotation question   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno, getAnnotation question   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno, getAnnotation question   Zhu, Lihua (Julie)
• [BioC] Analyze Single Color Agilent Microarray Data   axel.klenk at actelion.com
• [BioC] boxplot   axel.klenk at actelion.com
• [BioC] (no subject)   bigoun
• [BioC] single color using Limma : very low p-value "1.40456052121752e-60"   bigoun
• [BioC] [limma] Strange results in contrasts with dye-swap   mjonczyk at biol.uw.edu.pl
• [BioC] [limma] Strange results in contrasts with dye-swap   mjonczyk at biol.uw.edu.pl
• [BioC] Missing values - metaArray, GeneMeta, RankProd, metahdep   mjonczyk at biol.uw.edu.pl
• [BioC] Missing values - metaArray, GeneMeta, RankProd, metahdep   mjonczyk at biol.uw.edu.pl
• [BioC] [limma] Strange results in contrasts with dye-swap   mjonczyk at biol.uw.edu.pl
• [BioC] [limma] 0 weights = removed from analysis?   mjonczyk at biol.uw.edu.pl
• [BioC] Incorporating direct arrays to reference design   mjonczyk at biol.uw.edu.pl
• [BioC] LEA graph correction in topGO   tom carroll
• [BioC] matching sRNA sequences with whole data   chawla
• [BioC] finding ensemble Ids in Biomart   konika chawla
• [BioC] Differential expression analysis of DESeq   geng chen
• [BioC] Unable to read Affy Mouse Exon 1.0 ST array CEL file   cstrato
• [BioC] Probe-level analysis of exon arrays using xps   cstrato
• [BioC] R: Probe-level analysis of exon arrays using xps   cstrato
• [BioC] xps: root scheme annotations   cstrato
• [BioC] GOstats with Reactome database?   J.delasHeras at ed.ac.uk
• [BioC] GOstats with Reactome database?   J.delasHeras at ed.ac.uk
• [BioC] GEOquery: how to extract experimental data? (confused)   J.delasHeras at ed.ac.uk
• [BioC] GEOquery: how to extract experimental data? (confused)   J.delasHeras at ed.ac.uk
• [BioC] GEOquery: how to extract experimental data? (confused)   J.delasHeras at ed.ac.uk
• [BioC] Normalization of exon arrays with expected global RNA degradation   ekspiulo
• [BioC] block analysis in Limma   suri ghani
• [BioC] [job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in Milan   stefano iacus
• [BioC] Plot signal distribution in miRNA arrays   andrea.grilli at ior.it
• [BioC] Plot signal distribution in miRNA arrays   andrea.grilli at ior.it
• [BioC] compare IC50 in DRC package   andrea.grilli at ior.it
• [BioC] Probe ID to Sequence   khadeeja ismail
• [BioC] Probe ID to Sequence   khadeeja ismail
• [BioC] Understanding phenoTest   khadeeja ismail
• [BioC] To find rsIDs   khadeeja ismail
• [BioC] To find rsIDs   khadeeja ismail
• [BioC] Extarcting large number of sequences using BSgenome package   viritha kaza
• [BioC] Extarcting large number of sequences using BSgenome package   viritha kaza
• [BioC] Extarcting large number of sequences using BSgenome package   viritha kaza
• [BioC] median normalization   viritha kaza
• [BioC] median normalization   viritha kaza
• [BioC] Potential bug when finding baseline array in normalize.AffyBatch.invariantset   michael mayhew
• [BioC] lumi, Illumina Methylation 450k, and robust methylation calls   zoppoli pietro
• [BioC] which DESeq result is more reliable?????   pushp priya
• [BioC] mRNA-seq cross-species analysis, is it possible?   mali salmon
• [BioC] mRNA-seq cross-species analysis, is it possible?   mali salmon
• [BioC] RIP/CLIP-seq   mali salmon
• [BioC] RIP/CLIP-seq   mali salmon
• [BioC] Code for Block analysis in limma.   suri
• [BioC] plotrix - install is failing   alison waller
• [BioC] eBayes vs. anova   carol white
• [BioC] Error in applying mt.teststat in multtest package   carol white
• [BioC] Question about quantile normalization   qwertyui_period at yahoo.co.jp
• [BioC] problem in read in file with GEOquery library   zhliu.tju

Last message date: Wed Aug 31 19:24:46 CEST 2011
Archived on: Thu Sep 1 18:40:10 CEST 2011

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