October 2009 Archives by date

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Starting: Thu Oct 1 03:55:32 CEST 2009
Ending: Sat Oct 31 14:23:52 CET 2009
Messages: 465

• [BioC] lumi package   Weiwei Shi
• [BioC] how to unlock a package environment   Ariel Chernomoretz
• [BioC] GenTable of topGO   Vijay Kumar
• [BioC] urgent help   Sean Davis
• [BioC] (no subject)   eran tauber
• [BioC] how to unlock a package environment   Hervé Pagès
• [BioC] how to unlock a package environment   Hervé Pagès
• [BioC] how to unlock a package environment   Ariel Chernomoretz
• [BioC] how to unlock a package environment   Marc Carlson
• [BioC] annotation for illumina mouse-6 arrays? & GOstats   Yupu Liang
• [BioC] annotation for illumina mouse-6 arrays? & GOstats   Marc Carlson
• [BioC] How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   mauede at alice.it
• [BioC] How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   Sean Davis
• [BioC] New Bioconductor team member   Martin Morgan
• [BioC] forcePositive background option from lumiB   Ochsner, Scott A
• [BioC] From pilot to a large study   Mark Cowley
• [BioC] rtracklayer issue (getTable)   Mark Robinson
• [BioC] Determining which comparisons show significant difference Multi-class SAM   elliott harrison
• [BioC] Factorial design with two-channel microarray data with Limma   eran tauber
• [BioC] R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   mauede at alice.it
• [BioC] R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   Sean Davis
• [BioC] lumi package, 1.10.2 version but still has this problem   Weiwei Shi
• [BioC] Les associations pour developper vos affaires pour bioconductor de stat   Apache
• [BioC] R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   Chao-Jen Wong
• [BioC] R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   mauede at alice.it
• [BioC] R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   Chao-Jen Wong
• [BioC] R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   mauede at alice.it
• [BioC] Using limma to analyze GEO datasets/series from two-channel experiments   Ana Rodrigues
• [BioC] rtracklayer issue (getTable)   Michael Lawrence
• [BioC] Factorial design with two-channel microarray data with Limma   Gordon K Smyth
• [BioC] annotation for illumina mouse-6 arrays? & GOstats   Mark Dunning
• [BioC] dealing with missing values in microarray data set   Amit Kumar
• [BioC] flowClust Installation Help   Aric Gregson
• [BioC] Using limma to analyze GEO datasets/series from two-channel experiments   Gordon K Smyth
• [BioC] rtracklayer issue (getTable)   Mark Robinson
• [BioC] getting normexp (and log2 transformed) values - not further-processed M values   adoty at umd.edu
• [BioC] getting normexp (and log2 transformed) values - not further-processed M values   Sean Davis
• [BioC] rtracklayer issue (getTable)   Michael Lawrence
• [BioC] problem with downloading dataset using GEOquery   Kishor Tappita
• [BioC] problem with downloading dataset using GEOquery   Sean Davis
• [BioC] Oligo package   Thibault Helleputte
• [BioC] Oligo package   Benilton Carvalho
• [BioC] problem with downloading dataset using GEOquery   Kishor Tappita
• [BioC] info   Sean Davis
• [BioC] Hypergraph representation of reactions   Tony Chiang
• [BioC] Hypergraph representation of reactions   Robert Gentleman
• [BioC] Course announcement: Bioconductor Basics, Boston MA, Oct 29-30 2009   Vincent Carey
• [BioC] rtracklayer issue (getTable)   Michael Lawrence
• [BioC] getting normexp (and log2 transformed) values - not further-processed M values   adoty at umd.edu
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   spyne at broadinstitute.org
• [BioC] Frauen brauchen 20 cm   Diethard
• [BioC] bug? universeMappedCount for KEGGHyperG tests in GOstats   Cei Abreu-Goodger
• [BioC] problem with downloading dataset using GEOquery   Sean Davis
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   Nishant Gopalakrishnan
• [BioC] Gene names on topTable by limma   Marcos Pinho
• [BioC] Gene names on topTable by limma   James W. MacDonald
• [BioC] Gene names on topTable by limma   James W. MacDonald
• [BioC] getting normexp (and log2 transformed) values - not further-processed M values   Gordon K Smyth
• [BioC] Affymetrix genechip miRNA array analysis   Jordi Altirriba
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   Nishant Gopalakrishnan
• [BioC] Affymetrix genechip miRNA array analysis   Jordi Altirriba
• [BioC] How to decide which distance metric to use for micoarray data clustering?   Peng Yu
• [BioC] Course announcement: Bioconductor Basics, Boston MA, Oct 29-30 2009   Saroj K Mohapatra
• [BioC] How to decide which distance metric to use for micoarray data clustering?   anna freni sterrantino
• [BioC] Factorial design with two-channel microarray data with Limma   Eran Tauber
• [BioC] Problem with Hopach: "Error in dmat[ord, ]"   Samuel GRANJEAUD - IR/ICIM
• [BioC] Factorial design with two-channel microarray data with Limma   James W. MacDonald
• [BioC] Gene names on topTable by limma   Jenny Drnevich
• [BioC] How to decide which distance metric to use for micoarray data clustering?   Peng Yu
• [BioC] Searching miRNA probe ids and annotating probe id lists   Michael Black
• [BioC] How to decide which distance metric to use for micoarray data clustering?   Sean Davis
• [BioC] Searching miRNA probe ids and annotating probe id lists   Sean Davis
• [BioC] Fwd: How to decide which distance metric to use for micoarray data clustering?   Peng Yu
• [BioC] How to decide which distance metric to use for micoarray data clustering?   Sean Davis
• [BioC] How to decide which distance metric to use for micoarray data clustering?   Peng Yu
• [BioC] Fwd: How to decide which distance metric to use for micoarray data clustering?   Steve Lianoglou
• [BioC] Fwd: How to decide which distance metric to use for micoarray data clustering?   Peng Yu
• [BioC] can not install annotation package "pd.mogene.1.0.st.v1"   hailei zhang
• [BioC] fond the reason about installing package of "pd.mogene.1.0.st.v1"   hailei zhang
• [BioC] Fwd: How to decide which distance metric to use for micoarray data clustering?   Steve Lianoglou
• [BioC] can not install annotation package "pd.mogene.1.0.st.v1"   Vincent Carey
• [BioC] fond the reason about installing package of "pd.mogene.1.0.st.v1"   Benilton Carvalho
• [BioC] Affymetrix genechip miRNA array analysis   cstrato
• [BioC] Trans sites associated with a gene (Transfac database?)   Tim Smith
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   spyne at broadinstitute.org
• [BioC] Trans sites associated with a gene (Transfac database?)   Michael Lawrence
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   Josef Spidlen
• [BioC] Help Understand flowViz Error   Aric Gregson
• [BioC] heatmap.2 Z scores   Thomas Hampton
• [BioC] getting normexp (and log2 transformed) values - not further-processed M values   adoty at umd.edu
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   Nishant Gopalakrishnan
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   Nishant Gopalakrishnan
• [BioC] problem with downloading dataset using GEOquery   Kishor Tappita
• [BioC] Affymetrix genechip miRNA array analysis   Mark Cowley
• [BioC] R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   mauede at alice.it
• [BioC] R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?   Sean Davis
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Adeline Simon
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Carvalho, Benilton
• [BioC] Trans sites associated with a gene (Transfac database?)   Tim Smith
• [BioC] Trans sites associated with a gene (Transfac database?)   Sean Davis
• [BioC] Trans sites associated with a gene (Transfac database?)   Lapointe, David
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Adeline Simon
• [BioC] gridsize warnings arrayQualityMatrics   Amit Kumar
• [BioC] pileup function in ShortRead package   Nora Rieber
• [BioC] Trans sites associated with a gene (Transfac database?)   Iain Gallagher
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Benilton Carvalho
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Benilton Carvalho
• [BioC] heatmap.2 Z scores   James W. MacDonald
• [BioC] gridsize warnings arrayQualityMatrics   audrey at ebi.ac.uk
• [BioC] flowCore: logicle transformation of flow cytometry data   Josef Spidlen
• [BioC] pileup function in ShortRead package   Patrick Aboyoun
• [BioC] pileup function in ShortRead package   Martin Morgan
• [BioC] Trans sites associated with a gene (Transfac database?)   Tim Smith
• [BioC] Help Understand flowViz Error   Nishant Gopalakrishnan
• [BioC] The funcion getOrfs, doesn`t works, package: GeneR   avargas
• [BioC] The funcion getOrfs, doesn`t works, package: GeneR   Vincent Carey
• [BioC] The funcion getOrfs, doesn`t works, package: GeneR   avargas
• [BioC] The funcion getOrfs, doesn`t works, package: GeneR   Vincent Carey
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Adeline Simon
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   James W. MacDonald
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Adeline Simon
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Benilton Carvalho
• [BioC] Differential expression on individual Affy probes   Peter Saffrey
• [BioC] flowStats's warping function problem   Chao-Jen Wong
• [BioC] flowStats's warping function problem   Josef Spidlen
• [BioC] find index of GO string   ALok
• [BioC] find index of GO string   Artur Veloso
• [BioC] Plot SNP -log10 pvalues vs chromosomal position   Paul Evans
• [BioC] find index of GO string   Sean Davis
• [BioC] Differential expression on individual Affy probes   James W. MacDonald
• [BioC] Plot SNP -log10 pvalues vs chromosomal position   Vincent Carey
• [BioC] Package Icens_1.16.0.tar.gz has been built for Windows   Uwe.Ligges at R-Project.org
• [BioC] Chinese label in Rgraphviz   Michael
• [BioC] Expression values from gcRMA are different than before   Glyn Bradley
• [BioC] Posts available   Helen Parkinson
• [BioC] Einladung in mein Netzwerk auf LinkedIn   Jitao Zhang
• [BioC] flowStats's warping function problem   cwon2 at fhcrc.org
• [BioC] Annotation Rat Gene 1.0ST   Germán González
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   Tefina Paloma
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   Adeline Simon
• [BioC] New package for sample size calculations for planning proteomic profiling studies using mass spectrometry data   Stephen Nyangoma
• [BioC] testing triangular setup for finding instances of "all are different"   Wolfgang Raffelsberger
• [BioC] Affymetrix Mouse Promoter array / pdInfoBuilder   Hans-Ulrich Klein
• [BioC] Affymetrix Mouse Promoter array / pdInfoBuilder   Benilton Carvalho
• [BioC] Annotation Rat Gene 1.0ST   Benilton Carvalho
• [BioC] testing triangular setup for finding instances of "all are different"   James W. MacDonald
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   James W. MacDonald
• [BioC] Affymetrix Mouse Promoter array / pdInfoBuilder   zacher at lmb.uni-muenchen.de
• [BioC] flowStats's warping function problem   Chao-Jen Wong
• [BioC] flowStats's warping function problem   Chao-Jen Wong
• [BioC] computersize   Vibe Henriette Skov
• [BioC] Extract top-ranked genes from model fit   Chintanu
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   Tefina Paloma
• [BioC] Does hist (affy) function work on probe-pair values or probe-set values?   Javier Pérez Florido
• [BioC] Extract top-ranked genes from model fit   Claus-Jürgen Scholz
• [BioC] computersize   ALok
• [BioC] Extract top-ranked genes from model fit   James W. MacDonald
• [BioC] Does hist (affy) function work on probe-pair values or probe-set values?   James W. MacDonald
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   James W. MacDonald
• [BioC] Does hist (affy) function work on probe-pair values or probe-set values?   Jenny Drnevich
• [BioC] computersize   James W. MacDonald
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   Tefina Paloma
• [BioC] Post-Doctoral research position at the Leibniz Institute of Arteriosclerosis Research at the University of Muenster   Christoph Preuss
• [BioC] Problem with KEGGgraph   Fraser Sim
• [BioC] Problem with KEGGgraph   Tony Chiang
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   James W. MacDonald
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   Tefina Paloma
• [BioC] Problem with KEGGgraph   Fraser Sim
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   James W. MacDonald
• [BioC] Problem with KEGGgraph   Chao-Jen Wong
• [BioC] Francois Fauteux has sent you a hi5 Friend Request   Francois Fauteux
• [BioC] [SPAM] Westpac Account Information   Westpac Banking Corporation
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   Tefina Paloma
• [BioC] Differential expression on individual Affy probes (Peter Saffrey)   L L
• [BioC] testing triangular setup for finding instances of "all are different"   Gordon K Smyth
• [BioC] Boston Bioconductor Basics Course, Oct 29-30 2009   Vincent Carey
• [BioC] pairs function and diagonal limits   Mervi Alanne
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   Tefina Paloma
• [BioC] New package to identify differentially expressed genes from RNA-seq data   Likun Wang
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   James W. MacDonald
• [BioC] reverse complement or no reverse complemnt on biomaRt / biomart.org   Tefina Paloma
• [BioC] How to do RMA on a subset of probesets (using oligo)?   Peng Yu
• [BioC] How to do RMA on a subset of probesets (using oligo)?   Benilton Carvalho
• [BioC] problems in arrays   Brian Moldover
• [BioC] problems in arrays   Thomas Girke
• [BioC] New package to identify differentially expressed genes from RNA-seq data   Naomi Altman
• [BioC] New package to identify differentially expressed genes from RNA-seq data   Sean Davis
• [BioC] Affy miRNA   Lana Schaffer
• [BioC] New package to identify differentially expressed genes from RNA-seq data   Likun Wang
• [BioC] KEGG2heatmap - blank rows   Lavinia Gordon
• [BioC] KEGG2heatmap - blank rows   Saroj K Mohapatra
• [BioC] Array express looking in wrong place for file...   Paul Geeleher
• [BioC] How to include printtipweights and exclude control spots in single lmFit command   Agnieszka Zmienko
• [BioC] Affy miRNA   Chao-Jen Wong
• [BioC] Affy miRNA   James W. MacDonald
• [BioC] Affy miRNA   Lana Schaffer
• [BioC] affy: expresso in separated steps   Leonardo K. Shikida
• [BioC] affy: expresso in separated steps   James W. MacDonald
• [BioC] affy: expresso in separated steps   Leonardo K. Shikida
• [BioC] Affy miRNA   cstrato
• [BioC] Affy miRNA   Hooiveld, Guido
• [BioC] affy: expresso in separated steps   James W. MacDonald
• [BioC] affy: expresso in separated steps   cstrato
• [BioC] affy: expresso in separated steps   Leonardo K. Shikida
• [BioC] BioC Course Nov 18-20: High throughput sequencing analysis tools and approaches   Patrick Aboyoun
• [BioC] How to include printtipweights and exclude control spots in single lmFit command   Wolfgang Huber
• [BioC] Affy miRNA   Lana Schaffer
• [BioC] pre-processing gene expression data from multiple Affymetrix chip types in one batch   Diana Hubbard
• [BioC] biomaRt query   Tim Smith
• [BioC] Diff expression for RNA-seq: major update to edgeR package   Gordon K Smyth
• [BioC] affy: expresso in separated steps   Henrik Bengtsson
• [BioC] Bioconductor Digest, Vol 80, Issue 15   Lavinia Gordon
• [BioC] BSgenome data package of the human proteome: Does it exist?   Tillinghast, Guy, M.D.
• [BioC] New package to identify differentially expressed genes from RNA-seq data   Ulrike Goebel
• [BioC] General Transcription USD 0.42   prakashpatodia at cabbagetreesolutions.com
• [BioC] Economisez jusqu’à 41% sur votre voiture neuve   Auto IES via Effimail
• [BioC] Affy miRNA   Laurent Gautier
• [BioC] GSEA   Nikolaus Schantz
• [BioC] predict an ordinal response variable from high-throughput gene expression data   shirley zhang
• [BioC] gene filtering for limma lmFit   Peng, Fred
• [BioC] predict an ordinal response variable from high-throughput gene expression data   John Stevens
• [BioC] gene filtering for limma lmFit   James W. MacDonald
• [BioC] GSEA   James W. MacDonald
• [BioC] biomaRt query   Steffen at stat.Berkeley.EDU
• [BioC] Troubleshooting RWebServices   Bastian A.
• [BioC] paired microarray samples   Chris Fjell
• [BioC] paired microarray samples   Naomi Altman
• [BioC] Troubleshooting RWebServices   Martin Morgan
• [BioC] Using Limma for proteomics (2D DIGE) datasets   Tom Wenseleers
• [BioC] biomaRt query   Rhoda Kinsella
• [BioC] Most stable gene pairs in array experiment   David martin
• [BioC] lumi export   Mervi Alanne
• [BioC] Most stable gene pairs in array experiment   anna freni sterrantino
• [BioC] Ringo - finding enriched regions   Hans-Ulrich Klein
• [BioC] difference between "hsa-miR-xxx" and "hsa-miR-xxx*"   mauede at alice.it
• [BioC] difference between "hsa-miR-xxx" and "hsa-miR-xxx*"   Peter Robinson
• [BioC] an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'   Massimo Pinto
• [BioC] an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'   James W. MacDonald
• [BioC] How to get the uniquely mapping reads from object of AlignedRead class [ShortRead]?   Likun Wang
• [BioC] R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"   mauede at alice.it
• [BioC] How to get the uniquely mapping reads from object of AlignedRead class [ShortRead]?   Martin Morgan
• [BioC] how does an annotation package handle ambigious probe set id mappings   Andrew Yee
• [BioC] how does an annotation package handle ambigious probe set id mappings   James W. MacDonald
• [BioC] how does an annotation package handle ambigious probe set id mappings   Marc Carlson
• [BioC] how does an annotation package handle ambigious probe set id mappings   Andrew Yee
• [BioC] affy: expresso in separated steps   Leonardo K. Shikida
• [BioC] Most stable gene pairs in array experiment   Naomi Altman
• [BioC] Querying dbSNP   Sharon
• [BioC] Querying dbSNP   Marc Carlson
• [BioC] Querying dbSNP   Vincent Carey
• [BioC] Querying dbSNP   Steffen at stat.Berkeley.EDU
• [BioC] affy: expresso in separated steps   cstrato
• [BioC] H1N1 Swine Flu + H5N1 Avian Flu Conference & Exhibit November 12-13, 2009 Las Vegas, Nevada   Alicia Sommers
• [BioC] From DE genes to enriched TF binding sites?   De Bondt, An-7114 [PRDBE]
• [BioC] Most stable gene pairs in array experiment   David martin
• [BioC] Most stable gene pairs in array experiment   David martin
• [BioC] Most stable gene pairs in array experiment   Michael Dondrup
• [BioC] GeneChip Exon 1.0 ST Array practical data analysis course, 9th- 11th December 2009, Torino, Italy   rcaloger
• [BioC] Querying dbSNP   Sharon
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Massimo Pinto
• [BioC] an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'   Massimo Pinto
• [BioC] Querying dbSNP   Vincent Carey
• [BioC] Most stable gene pairs in array experiment   Marcelo Laia
• [BioC] Most stable gene pairs in array experiment   Michael Dondrup
• [BioC] workshops?   Brian Moldover
• [BioC] workshops?   Vincent Carey
• [BioC] Most stable gene pairs in array experiment   Naomi Altman
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Francois Pepin
• [BioC] How do I install devel version?   Morten Hansen
• [BioC] How do I install devel version?   Sean Davis
• [BioC] How do I install devel version?   James W. MacDonald
• [BioC] Ringo - finding enriched regions   Joern Toedling
• [BioC] Ringo - finding enriched regions   Hans-Ulrich Klein
• [BioC] limma help   Steve Shen
• [BioC] Querying dbSNP   Sharon
• [BioC] Querying dbSNP   Sharon
• [BioC] Querying dbSNP   Steffen at stat.Berkeley.EDU
• [BioC] Querying dbSNP   Sharon
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Tobias Straub
• [BioC] Querying dbSNP   Dr. Sanjay Bhatikar
• [BioC] Ringo - finding enriched regions   Joern Toedling
• [BioC] Ringo - finding enriched regions   Hans-Ulrich Klein
• [BioC] Using Limma for proteomics (2D DIGE) datasets   Tobias Straub
• [BioC] plotting multiple genes on a genome   Jarek Bryk
• [BioC] How do I install devel version?   Morten Hansen
• [BioC] Using Limma for proteomics (2D DIGE) datasets   Elmer Fernández
• [BioC] plotting multiple genes on a genome   Paul Geeleher
• [BioC] SNP Analysis   Peter Ganske
• [BioC] plotting multiple genes on a genome   Michael Lawrence
• [BioC] SNP Analysis   Vincent Carey
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Francois Pepin
• [BioC] SNP Analysis   Peter Ganske
• [BioC] batch info for cellHTS2   Baranes-Bachar, Keren (NIH/NCI) [V]
• [BioC] Very low P-values in limma   Paul Geeleher
• [BioC] Very low P-values in limma   Elmer Fernández
• [BioC] Very low P-values in limma   Vincent Carey
• [BioC] Very low P-values in limma   Wolfgang Huber
• [BioC] SNP to Gene mapping (GWAS)   Tim Smith
• [BioC] plotting multiple genes on a genome   J.Oosting at lumc.nl
• [BioC] SNP to Gene mapping (GWAS)   Vincent Carey
• [BioC] Very low P-values in limma   Thomas Hampton
• [BioC] Very low P-values in limma   Wei Shi
• [BioC] reducing RangedData   Robert Castelo
• [BioC] Using Limma for proteomics (2D DIGE) datasets   Keith Satterley
• [BioC] reducing RangedData   Patrick Aboyoun
• [BioC] Very low P-values in limma   Paul Geeleher
• [BioC] S4 object??   Wendy Chen
• [BioC] SNP Analysis   Claus-Jürgen Scholz
• [BioC] Very low P-values in limma   Wolfgang Huber
• [BioC] SNP Analysis   Peter Ganske
• [BioC] Very low P-values in limma   Paul Geeleher
• [BioC] S4 object??   James W. MacDonald
• [BioC] Very low P-values in limma   Wolfgang Huber
• [BioC] S4 object??   Wendy Chen
• [BioC] S4 object??   Sean Davis
• [BioC] S4 object??   James W. MacDonald
• [BioC] SNP Analysis   Vincent Carey
• [BioC] about Rgraphviz   Jenny Drnevich
• [BioC] reducing RangedData   Robert Castelo
• [BioC] Supressing welcome to bioconductor message?   Jeff Gentry
• [BioC] Supressing welcome to bioconductor message?   Seth Falcon
• [BioC] Supressing welcome to bioconductor message?   Sean Davis
• [BioC] Supressing welcome to bioconductor message?   Jeff Gentry
• [BioC] SNP Analysis   Scholz Claus-Jürgen
• [BioC] Tenure track position in statistical informatics   Olga Vitek
• [BioC] reducing RangedData   Patrick Aboyoun
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Massimo Pinto
• [BioC] Problem with affyQCReport   Man, Chris T.
• [BioC] S4 object??   Wendy Chen
• [BioC] S4 object??   Wendy Chen
• [BioC] S4 object??   Martin Morgan
• [BioC] Very low P-values in limma   Gordon K Smyth
• [BioC] Very low P-values in limma   Gordon K Smyth
• [BioC] Very low P-values in limma   Thomas Hampton
• [BioC] SNP Analysis   Benilton Carvalho
• [BioC] SNP Analysis   Paul Leo
• [BioC] Most stable gene pairs in array experiment   David martin
• [BioC] LIMMA adjusted P Values   Vijay Kumar
• [BioC] Very low P-values in limma   Paul Geeleher
• [BioC] limma design matrix sample names   koechert, karl
• [BioC] limma design matrix sample names   Sean Davis
• [BioC] LIMMA adjusted P Values   Sean Davis
• [BioC] LIMMA adjusted P Values   Vijay Kumar
• [BioC] snapCGH - could not find function "readPositionalInfo"   Kristian Almstrup
• [BioC] LIMMA adjusted P Values   Sean Davis
• [BioC] LIMMA adjusted P Values   Vijay Kumar
• [BioC] qPCR Events and 30% Discount on qPCR workshops   BioEPS / TATAA Biocenter Germany
• [BioC] SNP Analysis   Benilton Carvalho
• [BioC] Very low P-values in limma   Paul Geeleher
• [BioC] Problem with affyQCReport   James W. MacDonald
• [BioC] Very low P-values in limma   Mayer, Claus-Dieter
• [BioC] Agi4x44PreProcess probe summarization bug?   Tobias Straub
• [BioC] Very low P-values in limma   Paul Geeleher
• [BioC] Very low P-values in limma   Gordon K Smyth
• [BioC] Very low P-values in limma   Gordon K Smyth
• [BioC] reducing RangedData   Patrick Aboyoun
• [BioC] Harshlight (or similar) for Agilent arrays   David Garfield
• [BioC] reducing RangedData   Robert Castelo
• [BioC] Decouvrez les meubles design a prix Fabricant avec Myfab   L'equipe Myfab
• [BioC] SNP to Gene mapping (GWAS)   Tim Smith
• [BioC] SNP to Gene mapping (GWAS)   Vincent Carey
• [BioC] SNP to Gene mapping (GWAS)   Sean Davis
• [BioC] SNP Analysis   Paul Leo
• [BioC] SNP to Gene mapping (GWAS)   Tim Smith
• [BioC] SNP to Gene mapping (GWAS)   Paul Leo
• [BioC] Two colour arrays - advice on unconnected design, batch effect   Katrina Bell
• [BioC] help with linear model   Eleni Christodoulou
• [BioC] help with linear model   Claus-Jürgen Scholz
• [BioC] [R] help with linear model   Ista Zahn
• [BioC] Odp: [R] help with linear model   Petr PIKAL
• [BioC] [R] help with linear model   Eleni Christodoulou
• [BioC] Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)   Reek, J.
• [BioC] Antw: Re: SNP Analysis   Peter Ganske
• [BioC] [R] help with linear model   Petr PIKAL
• [BioC] Antw: Re: SNP Analysis   Benilton Carvalho
• [BioC] limma normexp background correction bug?   Tobias Straub
• [BioC] limma normexp background correction bug?   James W. MacDonald
• [BioC] The Westpac website has changed   Westpac Bank
• [BioC] Yingfang Tian has sent you a Desktopdating invitation   Yingfang Tian
• [BioC] come on,baby,bioconductor   Yjdayb
• [BioC] Two colour arrays - advice on unconnected design, batch effect   Gordon K Smyth
• [BioC] QA of two-color array data   Robert Castelo
• [BioC] BioMart kicks me out every now and then   mauede at alice.it
• [BioC] BioMart kicks me out every now and then   Sean Davis
• [BioC] classification method applied to microarrays (CMA package)   Juan Carlos Oliveros Collazos
• [BioC] classification method applied to microarrays (CMA package)   Stephen Henderson
• [BioC] BioMart kicks me out every now and then   Wolfgang Huber
• [BioC] R: BioMart kicks me out every now and then   mauede at alice.it
• [BioC] R: BioMart kicks me out every now and then   mauede at alice.it
• [BioC] R: BioMart kicks me out every now and then   Sean Davis
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Massimo Pinto
• [BioC] limma for lumi- request help design/contrast matrix   Maria Dolores Serafica
• [BioC] lmma for lumi- request for help design matrix/contrast matrix   Maria Dolores Serafica
• [BioC] QA of two-color array data   Naomi Altman
• [BioC] agi4x44preprocess   Neel Aluru
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Francois Pepin
• [BioC] agi4x44preprocess   Tobias Straub
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Juan Pedro Steibel
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Tobias Straub
• [BioC] Student project at European Bioinformatics Institute   Gabriella Rustici
• [BioC] R: BioMart kicks me out every now and then   Steffen at stat.Berkeley.EDU
• [BioC] Accessing COG/KOG database through Bioconductor   Javier Pérez Florido
• [BioC] Is there a package similar to mogene10stprobeset.db by for Affymetrix Exon Arrays?   Peng Yu
• [BioC] Using older Annotations in GenomeGraph Library   Philippe Thomas
• [BioC] Is there a package similar to mogene10stprobeset.db by for Affymetrix Exon Arrays?   Marc Carlson
• [BioC] limma normexp background correction bug?   Gordon K Smyth
• [BioC] limma normexp background correction bug?   Gordon K Smyth
• [BioC] [R] Is there a package similar to mogene10stprobeset.db by for Affymetrix Exon Arrays?   Tony Chiang
• [BioC] [R] Is there a package similar to mogene10stprobeset.db by for Affymetrix Exon Arrays?   Peng Yu
• [BioC] QA of two-color array data   Robert Castelo
• [BioC] Array express looking in wrong place for file...   Audrey Kauffmann
• [BioC] QA of two-color array data   Robert Castelo
• [BioC] [R] Is there a package similar to mogene10stprobeset.dbby for Affymetrix Exon Arrays?   Groot, Philip de
• [BioC] Problem with rma function in xps package with Affymetrix Human Gene 1.0 ST Array   Zhu, Jack (NIH/NCI) [C]
• [BioC] Very low P-values in limma   Paul Geeleher
• [BioC] Very low P-values in limma   Mayer, Claus-Dieter
• [BioC] From hg19 to ensembl56   Morten Hansen
• [BioC] Problem with rma function in xps package with Affymetrix Human Gene 1.0 ST Array   cstrato
• [BioC] batch info for cellHTS2   Gregoire Pau
• [BioC] Job openings in Boston, MA, USA   Wittner, Ben, Ph.D.
• [BioC] agi4x44preprocess   Neel Aluru
• [BioC] Bioconductor 2.5 is released   Patrick Aboyoun
• [BioC] biomaRt slow down?   Elizabeth Purdom
• [BioC] Discrepancy on results from gcrma function and justGCRMA   Jin
• [BioC] ArrayQualityMetrics: Problem with labels in plots. A bug??   jeremy wilson
• [BioC] Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets   Massimo Pinto
• [BioC] Accessing COG/KOG database through Bioconductor   Marc Carlson
• [BioC] question about ontoCompare() performance change   Scott Markel
• [BioC] Very low P-values in limma   Gordon K Smyth
• [BioC] agi4x44preprocess   Michael Dondrup
• [BioC] ArrayQualityMetrics: Problem with labels in plots. A bug??   Audrey Kauffmann
• [BioC] affylmGUI   A. de Lang
• [BioC] Very low P-values in limma   Olga Vitek
• [BioC] Using older Annotations in GenomeGraph Library   Steffen at stat.Berkeley.EDU
• [BioC] question about ontoCompare() performance change   Seth Falcon
• [BioC] Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets   Javier Pérez Florido
• [BioC] Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets   Benilton Carvalho
• [BioC] Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets   Javier Pérez Florido
• [BioC] Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets   Benilton Carvalho
• [BioC] Hello,I have very urgent questions   Sun Wei
• [BioC] Hello,I have very urgent questions   Thomas Hampton
• [BioC] Hello,I have very urgent questions   Saroj K Mohapatra
• [BioC] Hello,I have very urgent questions   Naomi Altman
• [BioC] ArrayQualityMetrics: Problem with labels in plots. A bug??   jeremy wilson
• [BioC] biomaRt- incorrect number of transcripts   Ivanek, Robert
• [BioC] ArrayQualityMetrics: Problem with labels in plots. A bug??   Audrey Kauffmann
• [BioC] rtracklayer bed import   Christian Ruckert
• [BioC] error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"   Massimo Pinto
• [BioC] Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets   Javier Pérez Florido
• [BioC] error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"   James W. MacDonald
• [BioC] error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"   James F. Reid
• [BioC] building an annotation library from scratch   Hooiveld, Guido
• [BioC] error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"   Robert Gentleman
• [BioC] MatLab SimBiology   mauede at alice.it
• [BioC] rtracklayer bed import   Michael Lawrence
• [BioC] Comparing/clustering data sets from two-color and single color array   xiangxue Guo
• [BioC] Comparing/clustering data sets from two-color and single color array   michael watson (IAH-C)
• [BioC] maSigPro error in getting a design matrix   lohith madireddy
• [BioC] maSigPro error in getting a design matrix   lohith madireddy
• [BioC] Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets   Benilton Carvalho
• [BioC] vsn2 dimension of the expression level matrix   Sam Wong
• [BioC] Hello,I have very urgent questions   Sun Wei
• [BioC] Hello,I have very urgent questions   Sean Davis
• [BioC] [R] MatLab SimBiology   Carlos Ortega
• [BioC] [R] MatLab SimBiology   David Winsemius

Last message date: Sat Oct 31 14:23:52 CET 2009
Archived on: Sat Oct 31 14:24:53 CET 2009

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